List of all items
Structs
Traits
Functions
Type Definitions
- utils::Args
- utils::Base
- utils::Basepair
- utils::BasepairScores
- utils::BulgeScores0x1
- utils::BulgeScoresInit
- utils::BulgeScoresLen
- utils::Char
- utils::DanglingScores
- utils::HairpinScoresInit
- utils::HairpinScoresLen
- utils::HairpinScoresSpecial
- utils::HelixCloseScores
- utils::Interior1x2
- utils::Interior2x2
- utils::InteriorScores1x1
- utils::InteriorScores1x1Contra
- utils::InteriorScores1x2
- utils::InteriorScores2x2
- utils::InteriorScoresAsymmetric
- utils::InteriorScoresBonus
- utils::InteriorScoresExplicit
- utils::InteriorScoresInit
- utils::InteriorScoresLen
- utils::InteriorScoresSymmetric
- utils::Prob
- utils::Score
- utils::Seq
- utils::StackScores
- utils::TerminalMismatchScores
Constants
- compiled_scores_contra::BASEPAIR_SCORES
- compiled_scores_contra::BULGE_SCORES_0X1
- compiled_scores_contra::BULGE_SCORES_LEN
- compiled_scores_contra::BULGE_SCORES_LEN_ATLEAST
- compiled_scores_contra::DANGLING_SCORES_LEFT
- compiled_scores_contra::DANGLING_SCORES_RIGHT
- compiled_scores_contra::EXTERNAL_SCORE_BASEPAIR
- compiled_scores_contra::EXTERNAL_SCORE_UNPAIR
- compiled_scores_contra::HAIRPIN_SCORES_LEN
- compiled_scores_contra::HAIRPIN_SCORES_LEN_ATLEAST
- compiled_scores_contra::HELIX_CLOSE_SCORES
- compiled_scores_contra::INTERIOR_SCORES_1X1_CONTRA
- compiled_scores_contra::INTERIOR_SCORES_ASYMMETRIC
- compiled_scores_contra::INTERIOR_SCORES_ASYMMETRIC_ATLEAST
- compiled_scores_contra::INTERIOR_SCORES_EXPLICIT
- compiled_scores_contra::INTERIOR_SCORES_LEN
- compiled_scores_contra::INTERIOR_SCORES_LEN_ATLEAST
- compiled_scores_contra::INTERIOR_SCORES_SYMMETRIC
- compiled_scores_contra::INTERIOR_SCORES_SYMMETRIC_ATLEAST
- compiled_scores_contra::MULTIBRANCH_SCORE_BASE
- compiled_scores_contra::MULTIBRANCH_SCORE_BASEPAIR
- compiled_scores_contra::MULTIBRANCH_SCORE_UNPAIR
- compiled_scores_contra::STACK_SCORES_CONTRA
- compiled_scores_contra::TERMINAL_MISMATCH_SCORES_CONTRA
- compiled_scores_turner::BULGE_SCORES_INIT
- compiled_scores_turner::DANGLING_SCORES_3PRIME
- compiled_scores_turner::DANGLING_SCORES_5PRIME
- compiled_scores_turner::HAIRPIN_SCORES_INIT
- compiled_scores_turner::INTERIOR_SCORES_1X1
- compiled_scores_turner::INTERIOR_SCORES_1X2
- compiled_scores_turner::INTERIOR_SCORES_2X2
- compiled_scores_turner::INTERIOR_SCORES_INIT
- compiled_scores_turner::STACK_SCORES
- compiled_scores_turner::TERMINAL_MISMATCH_SCORES_1XMANY
- compiled_scores_turner::TERMINAL_MISMATCH_SCORES_2X3
- compiled_scores_turner::TERMINAL_MISMATCH_SCORES_HAIRPIN
- compiled_scores_turner::TERMINAL_MISMATCH_SCORES_INTERIOR
- compiled_scores_turner::TERMINAL_MISMATCH_SCORES_MULTIBRANCH
- utils::A
- utils::AA
- utils::AC
- utils::AG
- utils::AU
- utils::A_LOWER
- utils::A_UPPER
- utils::C
- utils::CA
- utils::CC
- utils::CG
- utils::COEFF_HAIRPIN_LEN_EXTRAPOLATION
- utils::COEFF_NUM_BRANCHES
- utils::CU
- utils::C_LOWER
- utils::C_UPPER
- utils::G
- utils::GA
- utils::GAS_CONST
- utils::GC
- utils::GG
- utils::GU
- utils::G_LOWER
- utils::G_UPPER
- utils::HELIX_AUGU_END_PENALTY
- utils::INIT_MULTIBRANCH_BASE
- utils::INVERSE_TEMPERATURE
- utils::K0
- utils::KILO
- utils::MAX_2LOOP_LEN
- utils::MAX_HAIRPIN_LEN_EXTRAPOLATION
- utils::MAX_INTERIOR_ASYMMETRIC
- utils::MAX_INTERIOR_EXPLICIT
- utils::MAX_INTERIOR_SYMMETRIC
- utils::MAX_LOOP_LEN
- utils::MIN_HAIRPIN_LEN
- utils::MIN_HAIRPIN_LEN_EXTRAPOLATION
- utils::MIN_SPAN_HAIRPIN_CLOSE
- utils::NEG_INF
- utils::NINIO_COEFF
- utils::NINIO_MAX
- utils::NUM_BASES
- utils::NUM_SPECIAL_HAIRPINS
- utils::NUM_TRANSITS
- utils::TEMPERATURE
- utils::U
- utils::UA
- utils::UC
- utils::UG
- utils::UU
- utils::U_LOWER
- utils::U_UPPER