Releases

Random subsample FASTQ records by fraction or exact count — seqkit sample / seqtk sample equivalent

Re-pair shuffled paired-end FASTQ reads by name

Deterministic random downsampling of FASTQ to a target read count or fraction

Robot kinematic optimization in Rust — FK, analytic Jacobians, Levenberg-Marquardt IK. WASM-clean.

Encrypted streaming migration artifacts for reVault vaults and archives

FASTA utility toolkit — count, chroms, len, revcomp, rename, tab, wrap, unique, convert, and more

reVault API for creating and managing vaults

Historical native archive-format-v1 exporter for reVault migrations

Historical native vault-format-v1 exporter for reVault migrations

Extract FASTA subsequences by 1-based region — seqkit subseq port

Compute N50, L50, and assembly statistics from FASTA

A crate containing various utilities and tools used by Storm Software to manage monorepos.

Markdown documentation exporter plugin for OntoCore

Git remote protocol support for https://www.iroh.computer

Kinjo: mDNS TUI and commands launch for local network services

Mask FASTA sequences by BED regions — soft-mask (lowercase) or hard-mask (N)

Naming convention validator plugin for OntoCore

Shikumi (仕組み) — config discovery, hot-reload, and ArcSwap store for Nix-managed desktop apps

Plugin manifest discovery for OntoCore (v0.14 host foundation)

Pack-many-small-blobs-into-one decorator Store for S5

Typed agent loop with typed messages, typed events, swappable LLM transport, and plugin hooks. Provider-agnostic, sandbox-agnostic, tooling-agnostic. By Clark Labs Inc.

Internal study, experiment, revision, and control-plane schemas for burn_p2p.

Locate subsequences/motifs in FASTA files — seqkit locate port

In-silico protein digestion — trypsin/LysC/other enzymes, missed cleavages, peptide mass filter

Internal shared schemas, IDs, and deterministic encodings for burn_p2p.

Hanzo Network — L2 bridge and sequencing on Lux Network

A transparent Cargo wrapper that automatically manages Rust build artifacts to cap disk usage

Hanzo Network — Quasar post-quantum probabilistic consensus engine (wraps lux-consensus; Wave/FPC/Photon/Focus + Quasar P3Q finality)

Validate FASTQ format integrity (line counts, quality encoding)

Sequence-based FASTQ deduplication (kmer-bin or full-sequence hash). Rust port consolidating fastp -D and seqkit rmdup.