List of all items
Structs
- data_structures::FastaFile::FastaFile
- data_structures::InternalRep::gir::GIR
- data_structures::InternalRep::haplotype_instruction::HaplotypeInstruction
- data_structures::InternalRep::instruction::Instruction
- data_structures::InternalRep::personalized_genome::PersonalizedGenome
- data_structures::InternalRep::proband_instructions::ProbandInstruction
- data_structures::InternalRep::sequence_tape::SequenceTape
- data_structures::InternalRep::task::Task
- data_structures::InternalRep::transcript_instructions::TranscriptInstruction
- data_structures::Map::EarlyMap
- data_structures::Map::IntMap
- data_structures::MaskDecoder::BitMask
- data_structures::mutation_ds::Mutation
- data_structures::mutation_ds::MutationInfo
- data_structures::vcf_ds::AltTranscript
- data_structures::vcf_ds::Probands
- data_structures::vcf_ds::VCFRecords
- parts::cli::ParsedInput
- parts::exec::StatSummary
Enums
- data_structures::InternalRep::engines::Engine
- data_structures::mutation_ds::MutatedString
- data_structures::mutation_ds::MutationType
Functions
- functions::summary::compute_number_mutation_per_proband
- functions::summary::compute_number_of_mutations_per_transcript
- functions::summary::compute_type_mutations_per_patient
- functions::text_parser::get_bit_mask
- functions::text_parser::get_type
- functions::text_parser::parse_amino_acid_field
- functions::text_parser::parse_amino_acid_seq_position
- functions::text_parser::parse_fields
- functions::text_parser::remove_leading_zeros
- functions::text_parser::split_csq_string
- functions::vcf_tools::build_int_map_from_early
- functions::vcf_tools::early_to_intermediate_repr
- functions::vcf_tools::get_early_map
- functions::vcf_tools::get_unique_transcript
- functions::vcf_tools::group_muts_per_transcript
- parts::cli::parse_command_line
- parts::cli::state_env_var
- parts::exec::compute_states
- parts::exec::execute
- parts::io::compute_and_write_summary
- parts::io::parse_vcf
- parts::io::read_fasta
- parts::io::write_personalized_genomes
- readers::read_fasta_file
- readers::read_vcf
- readers::vcf_helpers::get_probands_names
- readers::vcf_helpers::get_records
- readers::vcf_helpers::is_supported_csq
- readers::vcf_helpers::read_file
- readers::vcf_helpers::return_if_supported
- writers::write_earlymap2json
- writers::write_intmap2json
- writers::write_num_number_mutation_per_proband
- writers::write_number_of_mutations_per_transcript
- writers::write_type_mutations_per_patient