List of all items
Structs
- aligner::PoastaAligner
- aligner::alignment::AlignedPair
- aligner::aln_graph::AlignmentGraphNode
- aligner::astar::AstarQueuedItem
- aligner::astar::AstarResult
- aligner::config::Affine2PieceDijkstra
- aligner::config::Affine2PieceMinGapCost
- aligner::config::AffineDijkstra
- aligner::config::AffineMinGapCost
- aligner::heuristic::Dijkstra
- aligner::heuristic::MinimumGapCostAffine
- aligner::queue::LayeredQueue
- aligner::scoring::gap_affine::AffineAlignmentGraph
- aligner::scoring::gap_affine::AffineAstarData
- aligner::scoring::gap_affine::AffineQueueLayer
- aligner::scoring::gap_affine::GapAffine
- aligner::scoring::gap_affine_2piece::Affine2PieceAlignmentGraph
- aligner::scoring::gap_affine_2piece::Affine2PieceAstarData
- aligner::scoring::gap_affine_2piece::Affine2PieceQueueLayer
- aligner::scoring::gap_affine_2piece::GapAffine2Piece
- bubbles::finder::SuperbubbleFinder
- bubbles::finder::SuperbubbleIterator
- bubbles::index::BubbleIndex
- bubbles::index::NodeBubbleMap
- bubbles::reached::ReachedBubbleExitsMatch
- debug::DebugOutputWriter
- graphs::poa::POAEdgeData
- graphs::poa::POAGraph
- graphs::poa::POANodeData
- graphs::poa::Sequence
- io::gaf::GAFRecord
- io::gfa::Field
- io::gfa::Header
- io::gfa::Link
- io::gfa::Segment
- io::graph::GraphSegments
- io::graph::POAGraphFromGFA
Enums
- aligner::AlignmentMode
- aligner::aln_graph::AlignState
- aligner::scoring::AlignmentType
- aligner::scoring::Score
- debug::messages::DebugOutputMessage
- errors::PoastaError
- graphs::poa::POAGraphWithIx
- io::gfa::FieldValue
- io::gfa::GfaLine
- io::gfa::Strand
Traits
- aligner::aln_graph::AlignmentGraph
- aligner::astar::AstarQueue
- aligner::astar::AstarVisited
- aligner::config::AlignmentConfig
- aligner::heuristic::AstarHeuristic
- aligner::offsets::OffsetType
- aligner::queue::QueueLayer
- aligner::scoring::AlignmentCosts
- aligner::scoring::GetAlignmentCosts
- graphs::AlignableRefGraph
- graphs::NodeIndexType
Functions
- aligner::alignment::print_alignment
- aligner::astar::astar_alignment
- graphs::tools::rev_postorder_nodes
- io::fasta::poa_graph_to_fasta
- io::gaf::alignment_to_gaf
- io::graph::format_as_dot
- io::graph::graph_to_dot
- io::graph::graph_to_gfa
- io::graph::load_graph
- io::graph::load_graph_from_fasta_msa
- io::graph::load_graph_from_gfa
- io::graph::save_graph