[−][src]Module perbase_lib::par_granges
ParGranges
Iterates over chunked genomic regions in parallel.
Structs
| CHANNEL_SIZE_MODIFIER_STR | CHANNEL_SIZE_MODIFIER as a str |
| CHUNKSIZE_STR | CHUNKSIZE as a str |
| ParGranges | ParGranges holds all the information and configuration needed to launch the
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Constants
| CHANNEL_SIZE_MODIFIER | A modifier to apply to the channel size formular that is (BYTES_INA_GIGABYTE * channel_size_modifier) * threads / size_of(R::P) 0.15 roughly corresponds to 1_000_000 PileupPosition objects per thread with some wiggle room. |
| CHUNKSIZE | The ideal number of basepairs each worker will receive. Total bp in memory at one time = |
Traits
| RegionProcessor | RegionProcessor defines the methods that must be implemented to process a region |