Enum parasailors::MatrixType [−] [src]

pub enum MatrixType {
    Identity,
    IdentityWithPenalty,
    Blosum100,
    Blosum30,
    Blosum35,
    Blosum40,
    Blosum45,
    Blosum50,
    Blosum55,
    Blosum60,
    Blosum62,
    Blosum65,
    Blosum70,
    Blosum75,
    Blosum80,
    Blosum85,
    Blosum90,
    Pam10,
    Pam100,
    Pam110,
    Pam120,
    Pam130,
    Pam140,
    Pam150,
    Pam160,
    Pam170,
    Pam180,
    Pam190,
    Pam20,
    Pam200,
    Pam210,
    Pam220,
    Pam230,
    Pam240,
    Pam250,
    Pam260,
    Pam270,
    Pam280,
    Pam290,
    Pam30,
    Pam300,
    Pam310,
    Pam320,
    Pam330,
    Pam340,
    Pam350,
    Pam360,
    Pam370,
    Pam380,
    Pam390,
    Pam40,
    Pam400,
    Pam410,
    Pam420,
    Pam430,
    Pam440,
    Pam450,
    Pam460,
    Pam470,
    Pam480,
    Pam490,
    Pam50,
    Pam500,
    Pam60,
    Pam70,
    Pam80,
    Pam90,
}

Denotes the type of the substitution matrix. Use Identity for simple edit-distance calculations.

Variants

Identity

The identity matrix awards 1 score for each direct match, and 0 score for each mismatch.

IdentityWithPenalty

An identity matrix which awards 1 score for each match and penalizes -1 for each mismatch.

Blosum100

The BLOSUM 100 substitution matrix.

Blosum30

The BLOSUM 30 substitution matrix.

Blosum35

The BLOSUM 35 substitution matrix.

Blosum40

The BLOSUM 40 substitution matrix.

Blosum45

The BLOSUM 45 substitution matrix.

Blosum50

The BLOSUM 50 substitution matrix.

Blosum55

The BLOSUM 55 substitution matrix.

Blosum60

The BLOSUM 60 substitution matrix.

Blosum62

The BLOSUM 62 substitution matrix.

Blosum65

The BLOSUM 65 substitution matrix.

Blosum70

The BLOSUM 70 substitution matrix.

Blosum75

The BLOSUM 75 substitution matrix.

Blosum80

The BLOSUM 80 substitution matrix.

Blosum85

The BLOSUM 85 substitution matrix.

Blosum90

The BLOSUM 90 substitution matrix.

Pam10

The PAM 10 substitution matrix.

Pam100

The PAM 100 substitution matrix.

Pam110

The PAM 110 substitution matrix.

Pam120

The PAM 120 substitution matrix.

Pam130

The PAM 130 substitution matrix.

Pam140

The PAM 140 substitution matrix.

Pam150

The PAM 150 substitution matrix.

Pam160

The PAM 160 substitution matrix.

Pam170

The PAM 170 substitution matrix.

Pam180

The PAM 180 substitution matrix.

Pam190

The PAM 190 substitution matrix.

Pam20

The PAM 20 substitution matrix.

Pam200

The PAM 200 substitution matrix.

Pam210

The PAM 210 substitution matrix.

Pam220

The PAM 220 substitution matrix.

Pam230

The PAM 230 substitution matrix.

Pam240

The PAM 240 substitution matrix.

Pam250

The PAM 250 substitution matrix.

Pam260

The PAM 260 substitution matrix.

Pam270

The PAM 270 substitution matrix.

Pam280

The PAM 280 substitution matrix.

Pam290

The PAM 290 substitution matrix.

Pam30

The PAM 30 substitution matrix.

Pam300

The PAM 300 substitution matrix.

Pam310

The PAM 310 substitution matrix.

Pam320

The PAM 320 substitution matrix.

Pam330

The PAM 330 substitution matrix.

Pam340

The PAM 340 substitution matrix.

Pam350

The PAM 350 substitution matrix.

Pam360

The PAM 360 substitution matrix.

Pam370

The PAM 370 substitution matrix.

Pam380

The PAM 380 substitution matrix.

Pam390

The PAM 390 substitution matrix.

Pam40

The PAM 40 substitution matrix.

Pam400

The PAM 400 substitution matrix.

Pam410

The PAM 410 substitution matrix.

Pam420

The PAM 420 substitution matrix.

Pam430

The PAM 430 substitution matrix.

Pam440

The PAM 440 substitution matrix.

Pam450

The PAM 450 substitution matrix.

Pam460

The PAM 460 substitution matrix.

Pam470

The PAM 470 substitution matrix.

Pam480

The PAM 480 substitution matrix.

Pam490

The PAM 490 substitution matrix.

Pam50

The PAM 50 substitution matrix.

Pam500

The PAM 500 substitution matrix.

Pam60

The PAM 60 substitution matrix.

Pam70

The PAM 70 substitution matrix.

Pam80

The PAM 80 substitution matrix.

Pam90

The PAM 90 substitution matrix.