Enum parasailors::MatrixType
[−]
[src]
pub enum MatrixType { Identity, Blosum100, Blosum30, Blosum35, Blosum40, Blosum45, Blosum50, Blosum55, Blosum60, Blosum62, Blosum65, Blosum70, Blosum75, Blosum80, Blosum85, Blosum90, Pam10, Pam100, Pam110, Pam120, Pam130, Pam140, Pam150, Pam160, Pam170, Pam180, Pam190, Pam20, Pam200, Pam210, Pam220, Pam230, Pam240, Pam250, Pam260, Pam270, Pam280, Pam290, Pam30, Pam300, Pam310, Pam320, Pam330, Pam340, Pam350, Pam360, Pam370, Pam380, Pam390, Pam40, Pam400, Pam410, Pam420, Pam430, Pam440, Pam450, Pam460, Pam470, Pam480, Pam490, Pam50, Pam500, Pam60, Pam70, Pam80, Pam90, }
Denotes the type of the substitution matrix. Use Identity for simple edit-distance calculations.
Variants
Identity
The identity matrix awards 1 score for each direct match, and -1 score for each mismatch.
Blosum100
The BLOSUM 100 substitution matrix.
Blosum30
The BLOSUM 30 substitution matrix.
Blosum35
The BLOSUM 35 substitution matrix.
Blosum40
The BLOSUM 40 substitution matrix.
Blosum45
The BLOSUM 45 substitution matrix.
Blosum50
The BLOSUM 50 substitution matrix.
Blosum55
The BLOSUM 55 substitution matrix.
Blosum60
The BLOSUM 60 substitution matrix.
Blosum62
The BLOSUM 62 substitution matrix.
Blosum65
The BLOSUM 65 substitution matrix.
Blosum70
The BLOSUM 70 substitution matrix.
Blosum75
The BLOSUM 75 substitution matrix.
Blosum80
The BLOSUM 80 substitution matrix.
Blosum85
The BLOSUM 85 substitution matrix.
Blosum90
The BLOSUM 90 substitution matrix.
Pam10
The PAM 10 substitution matrix.
Pam100
The PAM 100 substitution matrix.
Pam110
The PAM 110 substitution matrix.
Pam120
The PAM 120 substitution matrix.
Pam130
The PAM 130 substitution matrix.
Pam140
The PAM 140 substitution matrix.
Pam150
The PAM 150 substitution matrix.
Pam160
The PAM 160 substitution matrix.
Pam170
The PAM 170 substitution matrix.
Pam180
The PAM 180 substitution matrix.
Pam190
The PAM 190 substitution matrix.
Pam20
The PAM 20 substitution matrix.
Pam200
The PAM 200 substitution matrix.
Pam210
The PAM 210 substitution matrix.
Pam220
The PAM 220 substitution matrix.
Pam230
The PAM 230 substitution matrix.
Pam240
The PAM 240 substitution matrix.
Pam250
The PAM 250 substitution matrix.
Pam260
The PAM 260 substitution matrix.
Pam270
The PAM 270 substitution matrix.
Pam280
The PAM 280 substitution matrix.
Pam290
The PAM 290 substitution matrix.
Pam30
The PAM 30 substitution matrix.
Pam300
The PAM 300 substitution matrix.
Pam310
The PAM 310 substitution matrix.
Pam320
The PAM 320 substitution matrix.
Pam330
The PAM 330 substitution matrix.
Pam340
The PAM 340 substitution matrix.
Pam350
The PAM 350 substitution matrix.
Pam360
The PAM 360 substitution matrix.
Pam370
The PAM 370 substitution matrix.
Pam380
The PAM 380 substitution matrix.
Pam390
The PAM 390 substitution matrix.
Pam40
The PAM 40 substitution matrix.
Pam400
The PAM 400 substitution matrix.
Pam410
The PAM 410 substitution matrix.
Pam420
The PAM 420 substitution matrix.
Pam430
The PAM 430 substitution matrix.
Pam440
The PAM 440 substitution matrix.
Pam450
The PAM 450 substitution matrix.
Pam460
The PAM 460 substitution matrix.
Pam470
The PAM 470 substitution matrix.
Pam480
The PAM 480 substitution matrix.
Pam490
The PAM 490 substitution matrix.
Pam50
The PAM 50 substitution matrix.
Pam500
The PAM 500 substitution matrix.
Pam60
The PAM 60 substitution matrix.
Pam70
The PAM 70 substitution matrix.
Pam80
The PAM 80 substitution matrix.
Pam90
The PAM 90 substitution matrix.