List of all items
Structs
- calling::haplotypes::haplotypes::AlleleFreqDist
- calling::haplotypes::haplotypes::CandidateMatrix
- calling::haplotypes::haplotypes::Haplotype
- calling::haplotypes::haplotypes::HaplotypeVariants
- calling::haplotypes::haplotypes::VariantCalls
- calling::haplotypes::haplotypes::VariantID
- calling::haplotypes::hla::Caller
- calling::haplotypes::hla::CallerBuilder
- calling::haplotypes::virus::Caller
- calling::haplotypes::virus::CallerBuilder
- candidates::hla::Caller
- candidates::hla::CallerBuilder
- candidates::virus::generic::Caller
- candidates::virus::generic::CallerBuilder
- candidates::virus::sarscov2::Caller
- candidates::virus::sarscov2::CallerBuilder
- model::Data
- model::HaplotypeFractions
- preprocess::hla::Caller
- preprocess::hla::CallerBuilder
- preprocess::virus::Caller
- preprocess::virus::CallerBuilder
Enums
- calling::haplotypes::haplotypes::PriorTypes
- calling::haplotypes::haplotypes::VariantStatus
- calling::haplotypes::hla::CallerBuilderError
- calling::haplotypes::virus::CallerBuilderError
- candidates::hla::CallerBuilderError
- candidates::virus::generic::CallerBuilderError
- candidates::virus::sarscov2::CallerBuilderError
- cli::CallKind
- cli::CandidatesKind
- cli::CandidatesVirusMode
- cli::Orthanq
- cli::PreprocessKind
- cli::VirusKind
- preprocess::hla::CallerBuilderError
- preprocess::virus::CallerBuilderError
Functions
- calling::haplotypes::haplotypes::collect_constraints_and_variants
- calling::haplotypes::haplotypes::linear_program
- calling::haplotypes::haplotypes::plot_densities
- calling::haplotypes::haplotypes::plot_prediction
- calling::haplotypes::haplotypes::write_results
- candidates::hla::alignment
- candidates::hla::convert_candidate_variants_to_array
- candidates::hla::find_variants_from_cigar
- candidates::virus::generic::write_to_vcf
- cli::run