List of all items

Structs

• hydrostructure::incremental_hydrostructure::IncrementalHydrostructure
• hydrostructure::incremental_hydrostructure::conjunctive_safety_tracker::ConjunctiveSafetyTracker
• hydrostructure::incremental_hydrostructure::node_centric_component_tracker::NodeCentricComponentTracker
• hydrostructure::incremental_hydrostructure::river_is_non_empty_tracker::RiverIsNonEmptyTracker
• hydrostructure::incremental_hydrostructure::vapor_is_path_tracker::VaporIsPathTracker
• macrotigs::macronodes::Macronodes
• macrotigs::macronodes::strongly_connected_macronode_algorithm::FasterStronglyConnectedMacronodes
• macrotigs::macronodes::strongly_connected_macronode_algorithm::StronglyConnectedMacronodes
• macrotigs::macrotigs::Macrotigs
• macrotigs::macrotigs::default_macrotig_link_algorithm::DefaultMacrotigLinkAlgorithm
• macrotigs::microtigs::Microtigs
• macrotigs::microtigs::strongly_connected_hydrostructure_based_maximal_microtig_algorithm::StronglyConnectedHydrostructureBasedMaximalMicrotigs
• omnitigs::Omnitig
• omnitigs::Omnitigs
• omnitigs::default_node_centric_trivial_omnitigs::DefaultTrivialNodeCentricOmnitigAlgorithm
• omnitigs::default_trivial_omnitigs::DefaultTrivialOmnitigAlgorithm
• omnitigs::incremental_hydrostructure_macrotig_based_non_trivial_multi_safe::IncrementalHydrostructureMacrotigBasedNonTrivialMultiSafeAlgorithm
• omnitigs::incremental_hydrostructure_macrotig_based_non_trivial_omnitigs::IncrementalHydrostructureMacrotigBasedNonTrivialOmnitigAlgorithm
• omnitigs::univocal_extension_algorithms::NonSccNodeCentricUnivocalExtensionStrategy
• omnitigs::univocal_extension_algorithms::NonSccUnivocalExtensionStrategy
• omnitigs::univocal_extension_algorithms::SccNodeCentricUnivocalExtensionStrategy
• omnitigs::univocal_extension_algorithms::SccUnivocalExtensionStrategy
• unitigs::EdgeUnitig
• unitigs::EdgeUnitigs
• unitigs::NodeUnitig
• unitigs::NodeUnitigs
• unitigs::uncompacted_unitigs::UncompactedNodeUnitigs

Enums

• hydrostructure::static_hydrostructure::StaticHydrostructure
• omnitigs::TruncationMode
• omnitigs::default_trivial_omnitigs::EdgeInTrivialOmnitigHeart

Traits

• hydrostructure::Hydrostructure
• hydrostructure::incremental_hydrostructure::IncrementalSafetyTracker
• macrotigs::macronodes::MacronodeAlgorithm
• macrotigs::macrotigs::MaximalMacrotigsAlgorithm
• macrotigs::microtigs::MaximalMicrotigsAlgorithm
• omnitigs::MacrotigBasedNonTrivialOmnitigAlgorithm
• omnitigs::NodeCentricOmnitigs
• omnitigs::NodeCentricUnivocalExtensionAlgorithm
• omnitigs::TrivialNodeCentricOmnitigAlgorithm
• omnitigs::TrivialOmnitigAlgorithm
• omnitigs::UnivocalExtensionAlgorithm
• walks::EdgeOmnitigLikeExt
• walks::NodeOmnitigLikeExt

Functions

• omnitigs::default_trivial_omnitigs::is_edge_in_maximal_trivial_omnitig_heart
• omnitigs::remove_subwalks_and_reverse_complements_from_walks
• restricted_reachability::compute_hydrostructure_backward_reachability
• restricted_reachability::compute_hydrostructure_forward_reachability
• restricted_reachability::compute_incremental_restricted_backward_edge_reachability
• restricted_reachability::compute_incremental_restricted_forward_edge_reachability
• restricted_reachability::compute_inverse_restricted_backward_reachability
• restricted_reachability::compute_inverse_restricted_forward_reachability
• restricted_reachability::compute_restricted_backward_reachability
• restricted_reachability::compute_restricted_edge_reachability
• restricted_reachability::compute_restricted_forward_reachability
• restricted_reachability::compute_restricted_node_reachability
• unitigs::uncompacted_unitigs::count_uncompacted_edge_unitigs
• unitigs::uncompacted_unitigs::count_uncompacted_node_unitigs

Type Definitions

• hydrostructure::incremental_hydrostructure::BridgeLikeIncrementalHydrostructure
• hydrostructure::incremental_hydrostructure::MultiSafeIncrementalHydrostructure
• hydrostructure::incremental_hydrostructure::NodeBridgeLikeIncrementalHydrostructure
• omnitigs::default_node_centric_trivial_omnitigs::NonSccTrivialNodeCentricOmnitigAlgorithm
• omnitigs::default_node_centric_trivial_omnitigs::SccTrivialNodeCentricOmnitigAlgorithm
• omnitigs::default_trivial_omnitigs::NonSccTrivialOmnitigAlgorithm
• omnitigs::default_trivial_omnitigs::SccTrivialOmnitigAlgorithm