Crate nwr

Structs

• Taxon

Functions

• add_comment
  Adds key-value comments to a node
• add_comment_kv
  Adds key-value comments to a node
• check_monophyly
• connect_txdb
  Connect taxonomy.sqlite in this dir
• find_rank
• format_subtree
• format_tree
  Writes the tree with indentations
• get_all_descendent
  All direct or indirect descendents of the Node. The ID given as argument is included in the results.
• get_ancestor
  Retrieve the ancestor
• get_comment_k
  Retrieves value from comments of a node
• get_descendent
  All direct descendents of the Node, not a recursive fetchall
• get_lineage
  All Nodes to the root (with ID 1)
• get_name_id
  Get hash of name-id
• get_names
  Get node names
• get_tax_id
  Names to Taxonomy IDs
• get_taxon
  IDs to Nodes
• insert_parent
  Insert a node in the middle of the desired node and its parent
• match_names
• match_positions
• match_restrict
• nwr_path
  nwr working path
• order_tree_an
  Sort the children of each node by alphanumeric order of labels
• order_tree_nd
  Sort the children of each node by number of descendants
• read_newick
• swap_parent
  Swap parent-child link of a node
• term_to_tax_id
  Convert terms to Taxonomy IDs Accepted forms: ID; “scientific name”; scientific_name