1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
//! CRAM index.

#[cfg(feature = "async")]
pub mod r#async;

mod reader;
pub mod record;
mod writer;

pub use self::{reader::Reader, record::Record, writer::Writer};

#[cfg(feature = "async")]
pub use self::r#async::Reader as AsyncReader;

use std::{fs::File, io, path::Path};

/// A CRAM index.
pub type Index = Vec<Record>;

/// Reads the entire contents of a CRAM index.
///
/// This is a convenience function and is equivalent to opening the file at the given path and
/// reading the index.
///
/// # Examples
///
/// ```no_run
/// # use std::io;
/// use noodles_cram::crai;
/// let index = crai::read("sample.cram.crai")?;
/// # Ok::<(), io::Error>(())
/// ```
pub fn read<P>(src: P) -> io::Result<Index>
where
    P: AsRef<Path>,
{
    let mut reader = File::open(src).map(Reader::new)?;
    reader.read_index()
}