Crate neofold

Modules

utils

Structs

FastaRecord
LogProbMatPairOnSta
LogStaPpfMatSets
LogStaPpfMats
MeaSs
ProbMatPairOnSta
StaFeParams

Constants

BASE_PAIRING_LEFT_BASE
BASE_PAIRING_RIGHT_BASE
INVERSE_TEMPERATURE
UNPAIRING_BASE

Functions

get_log_sta_ppf_4d_mats
get_prob_mat_pairs_on_sta_with_rna_id_pairs
get_seq_len_diff
io_algo_4_prob_mat_pair_on_rna_sta
io_algo_4_log_prob_mat_pair_on_rna_sta
is_rna_base
neofold
pct_of_bpp_and_upp_mat
print_program_usage
prob_cons_transformation_of_log_prob_mat_pair_on_sta
remove_small_bpps_from_bpp_mat
remove_zeros_from_bpp_mat

Type Definitions

Args
FastaId
FastaRecords
LogProb3dMat
LogProb4dMat
LogProbMatPairsOnStaWithRnaIdPairs
LogProbMats
LogProbSeqs
Mea
MeaMat
MeaSsChar
MeaSsStr
Meas
PosPairSeqsWithPosPairs
PosPairs
PosQuadruple
PosSeqsWithPoss
PosTriple
Poss
Prob1dMat
Prob3dMat
Prob4dMat
ProbMats
RnaId
RnaIdPair
SeqPair
SparseLogProbMat
SparseProbMat
StaFeParamSetsWithRnaIdPairs