Module needletail::parser

Handles all the FASTA/FASTQ parsing

Structs

• FastaReader
  Parser for FASTA files. Only use this directly if you know your file is FASTA and that it is not compressed as it does not handle decompression. If you are unsure, it’s better to use parse_fastx_file.
• FastqReader
  Parser for FASTQ files. Only use this directly if you know your file is FASTQ and that it is not compressed as it does not handle decompression. If you are unsure, it’s better to use parse_fastx_file.
• SequenceRecord
  A FASTA or FASTQ record

Enums

• Format
  FASTA or FASTQ?
• LineEnding
  Whether it uses \r\n or only \n

Traits

• FastxReader
  The main trait, iterator-like, that the FASTA and FASTQ readers implement

Functions

• mask_header_tabs
  Mask tabs in header lines to |s
• mask_header_utf8
  Convert bad UTF8 characters into �s
• parse_fastx_file
  The main entry point of needletail if you’re reading from a file. Shortcut to calling parse_fastx_reader with a file
• parse_fastx_reader
  The main entry point of needletail if you’re reading from something that implements std::io::Read. This automatically detects whether the file is:
• parse_fastx_stdin
  The main entry point of needletail if you’re reading from stdin. Shortcut to calling parse_fastx_reader with stdin()
• write_fasta
  Write a FASTA record
• write_fastq