Module needletail::bitkmer

source ·
Expand description

Compact binary representations of nucleic acid kmers

Structs

Functions

  • bitmer_to_bytes
  • canonical
    Return the lexigraphically lowest of the BitKmer and its reverse complement and whether the returned kmer is the reverse_complement (true) or the original (false)
  • minimizer
    Find the lexicographically lowest substring of a given length in the BitKmer
  • reverse_complement
    Reverse complement a BitKmer (reverses the sequence and swaps A<>T and G<>C)

Type Definitions