List of all items

Structs

• AlignResult
• NoMemLeakAligner
• align_processor::AlignInfo
• align_processor::SingleQueryAlignInfo
• align_processor::TseqAndRecord
• align_processor::align_metric::METRIC_CSV_HEADER
• align_processor::align_metric::Metric
• align_processor::hp_tr_metric::AlignCounter
• align_processor::hp_tr_metric::HpTrMetric
• align_processor::hp_tr_metric::METRIC_CSV_HEADER
• align_processor::time_err_metric::METRIC_CSV_HEADER
• align_processor::time_err_metric::TimeErrMetric
• align_processor::time_err_metric::TimeSpan
• bam_writer::BamOupArgs
• mapping_ext::MappingExt
• params::AlignParams
• params::IndexParams
• params::InputFilterParams
• params::MapParams
• params::OupParams

Enums

• aligned_pairs::AlignOp

Traits

• align_processor::TMetric
• aligned_pairs::TAlignedPairs
• params::TOverrideAlignerParam

Functions

• align_processor::align_metric::fill_deletion_info
• align_processor::align_metric::fill_deletion_info_v2
• align_processor::align_metric::fill_insertion_info
• align_processor::align_metric::fill_metric_from_align_pair
• align_processor::align_metric::get_next_rbase
• align_processor::align_metric::get_pre_rbase
• align_single_query_to_targets
• align_worker
• bam_writer::write_bam_worker
• build_aligner
• build_aligner_v2
• build_bam_record_from_mapping
• cigar_adjust::cigar_adjust_poly_gap_left_align
• cigar_cvt::mapping_cigar2htslib_cigar_str
• cigar_cvt::mapping_cigar2str
• convert_mapping_cigar_to_record_cigar
• hits2records
• mapping2str
• query_seq_sender
• set_primary_alignment_according_2_align_score
• set_primary_supp_alignment_according_2_align_score
• targets_to_targetsidx
• visualization::blast_like_alignment

Type Aliases

• BamReader
• BamRecord
• BamWriter