Crate mibig_taxa 

NCBI taxdump handling for MIBiG

Usage

To build a taxon cache, use TaxonCache:

use std::path::PathBuf;
use mibig_taxa::TaxonCache;

let cachefile = PathBuf::from("path/to/cache");
let taxdump = PathBuf::from("path/to/rankedlineage.dmp");
let mergeddump = PathBuf::from("path/to/merged.dmp");
let datadir = PathBuf::from("path/to/mibig/jsons/");

let mut taxon_cache = TaxonCache::new();
taxon_cache.initialise_from_paths(taxdump, mergeddump, datadir)?;
taxon_cache.save_path(&cachefile)?;

Re-exports

pub use crate::errors::MibigTaxonError;

pub use crate::mibig::TaxonCache;

pub use crate::taxa::NcbiTaxEntry;

Modules

errors

MIBiG taxa error definitions

mibig

Library implementation

taxa

Taxonomy helper classes