List of all items

Structs

• chemistry::amino_acid::InternalAminoAcid
• chemistry::molecule::WATER_MONO_MASS
• database::scylla::blob_table::BlobTable
• database::scylla::client::Client
• database::scylla::client::URL_PASER_REGEX
• database::scylla::configuration_table::ConfigurationIncompleteError
• database::scylla::configuration_table::ConfigurationTable
• database::scylla::database_build::DatabaseBuild
• database::scylla::peptide_search::FinalizedPeptideCondition
• database::scylla::peptide_search::MultiTaskSearch
• database::scylla::peptide_search::PeptideCondition
• database::scylla::peptide_search::ThreadSafeDistinctFilterFunction
• database::scylla::peptide_table::PeptideTable
• database::scylla::protein_table::ProteinTable
• database::scylla::taxonomy_tree_table::TaxonomyTreeTable
• entities::configuration::Configuration
• entities::domain::Domain
• entities::peptide::MatchingPeptide
• entities::peptide::Peptide
• entities::peptide::TsvPeptide
• entities::protein::Protein
• functions::post_translational_modification::PTMCollection
• io::post_translational_modification_csv::reader::Reader
• io::uniprot_text::reader::Reader
• tools::message_logger::MessageLogger
• tools::metrics_monitor::MetricsMonitor
• tools::metrics_monitor::MonitorableMetric
• tools::peptide_mass_counter::PeptideMassCounter
• tools::peptide_partitioner::PeptidePartitioner
• tools::progress_monitor::ProgressMonitor
• tools::protein_counter::ProteinCounter
• tools::queue_monitor::QueueMonitor
• tools::scylla_client_metrics_monitor::ScyllaClientMetricsMonitor
• web::app_state::AppState
• web::peptide_controller::GetPeptideRequestQuery
• web::peptide_controller::SearchRequestBody
• web::peptide_controller::SearchRequestQuery
• web::protein_controller::GetProteinRequestQuery
• web::taxonomy_controller::SearchRequestBody
• web::tools_controller::DigestionRequestBody
• web::tools_controller::GetPartitionQuery
• web::web_error::WebError

Enums

• functions::post_translational_modification::PTMCollectionValidationError
• tools::metrics_monitor::MonitorableMetricType
• web::peptide_controller::SearchRequestMass

Traits

• database::generic_client::GenericClient
• database::scylla::peptide_search::FilterFunction
• database::scylla::peptide_search::Search
• database::table::Table
• tools::message_logger::ToLogMessage
• tools::queue_monitor::MonitorableQueue

Functions

• chemistry::amino_acid::calc_sequence_mass_int
• chemistry::amino_acid::get_internal_amino_acid_by_one_letter_code
• database::scylla::create_keyspace_if_not_exists
• database::scylla::drop_keyspace
• database::scylla::migrations::get_latest_migration_id
• database::scylla::migrations::run_migrations
• database::scylla::prepare_database_for_tests
• mass::convert::to_float
• mass::convert::to_int
• tools::cql::get_cql_value
• tools::display::bytes_to_human_readable
• tools::fancy_regex::split
• tools::mass_to_partition::mass_to_partition_index
• tools::omicstools::amino_acid_to_json
• tools::omicstools::convert_to_internal_dummy_peptide
• tools::omicstools::convert_to_internal_peptide
• tools::omicstools::remove_unknown_from_digest
• tools::peptide_partitioner::get_mass_partition
• tools::serde::deserialize_mass_from_int
• tools::serde::deserialize_mass_vec_from_int_vec
• tools::serde::serialize_mass_to_float
• tools::serde::serialize_mass_vec_to_float_vec
• web::chemistry_controller::get_all_amino_acids
• web::chemistry_controller::get_amino_acid
• web::configuration_controller::get_configuration
• web::error_controller::page_not_found
• web::peptide_controller::get_peptide
• web::peptide_controller::get_peptide_existence
• web::peptide_controller::get_search
• web::peptide_controller::post_search
• web::protein_controller::get_protein
• web::protein_controller::search_protein
• web::server::start
• web::taxonomy_controller::get_sub_taxonomies
• web::taxonomy_controller::get_taxonomy
• web::taxonomy_controller::search_taxonomies
• web::tools_controller::digest
• web::tools_controller::get_mass
• web::tools_controller::get_partition
• web::tools_controller::get_proteases

Type Aliases

• database::scylla::peptide_search::FalliblePeptideStream
• database::scylla::peptide_search::FinalizedPeptideConditionMap
• database::scylla::peptide_table::TypedPeptideRow

Constants

• chemistry::amino_acid::INTERNAL_ALANINE
• chemistry::amino_acid::INTERNAL_ARGININE
• chemistry::amino_acid::INTERNAL_ASPARAGINE
• chemistry::amino_acid::INTERNAL_ASPARAGINE_OR_ASPARTIC_ACID
• chemistry::amino_acid::INTERNAL_ASPARTIC_ACID
• chemistry::amino_acid::INTERNAL_CYSTEINE
• chemistry::amino_acid::INTERNAL_GLUTAMIC_ACID
• chemistry::amino_acid::INTERNAL_GLUTAMINE
• chemistry::amino_acid::INTERNAL_GLUTAMINE_OR_GLUTAMIC_ACID
• chemistry::amino_acid::INTERNAL_GLYCINE
• chemistry::amino_acid::INTERNAL_HISTIDINE
• chemistry::amino_acid::INTERNAL_ISOLEUCINE
• chemistry::amino_acid::INTERNAL_ISOLEUCINE_OR_LEUCINE
• chemistry::amino_acid::INTERNAL_LEUCINE
• chemistry::amino_acid::INTERNAL_LYSINE
• chemistry::amino_acid::INTERNAL_METHIONINE
• chemistry::amino_acid::INTERNAL_PHENYLALANINE
• chemistry::amino_acid::INTERNAL_PROLINE
• chemistry::amino_acid::INTERNAL_PYRROLYSINE
• chemistry::amino_acid::INTERNAL_SELENOCYSTEINE
• chemistry::amino_acid::INTERNAL_SERINE
• chemistry::amino_acid::INTERNAL_THREONINE
• chemistry::amino_acid::INTERNAL_TRYPTOPHAN
• chemistry::amino_acid::INTERNAL_TYROSINE
• chemistry::amino_acid::INTERNAL_UNKNOWN
• chemistry::amino_acid::INTERNAL_VALINE
• database::scylla::blob_table::COLUMNS
• database::scylla::blob_table::MAX_BLOB_SIZE
• database::scylla::blob_table::MAX_PAGES_PER_SELECT
• database::scylla::blob_table::TABLE_NAME
• database::scylla::configuration_table::JSON_KEY
• database::scylla::configuration_table::MAX_NUMBER_OF_MISSED_CLEAVAGES_KEY
• database::scylla::configuration_table::MAX_PEPTIDE_LENGTH_KEY
• database::scylla::configuration_table::MIN_PEPTIDE_LENGTH_KEY
• database::scylla::configuration_table::PARTITION_LIMITS_KEY
• database::scylla::configuration_table::PROTEASE_NAME_KEY
• database::scylla::configuration_table::REMOVE_PEPTIDES_CONTAINING_UNKNOWN_KEY
• database::scylla::configuration_table::TABLE_NAME
• database::scylla::database_build::ERRORS_COUNTER_NAME
• database::scylla::database_build::METADATA_ERRORS_COUNTER_NAME
• database::scylla::database_build::METADATA_PROCESSED_PEPTIDES_COUNTER_NAME
• database::scylla::database_build::PROCESSED_PEPTIDES_COUNTER_NAME
• database::scylla::database_build::PROCESSED_PROTEINS_COUNTER_NAME
• database::scylla::database_build::PROTEIN_QUEUE_MULTIPLICATOR
• database::scylla::database_build::PROTEIN_QUEUE_SIZE_COUNTER_NAME
• database::scylla::database_build::UNRECOVERABLE_ERRORS_COUNTER_NAME
• database::scylla::peptide_table::SELECT_COLS
• database::scylla::peptide_table::TABLE_NAME
• database::scylla::schema::CREATE_KEYSPACE
• database::scylla::schema::DROP_KEYSPACE
• database::scylla::schema::UP
• database::scylla::taxonomy_tree_table::KEY_PREFIX
• mass::convert::MASS_CONVERT_FACTOR
• tools::peptide_partitioner::PARTITION_TOLERANCE
• tools::progress_monitor::UPDATE_INTERVAL
• tools::queue_monitor::UPDATE_INTERVAL
• tools::scylla_client_metrics_monitor::UPDATE_INTERVAL