Struct light_phylogeny::Config

source ·

pub struct Config {
    pub species_color: String,
    pub species_opacity: String,
    pub single_gene_color: String,
    pub gene_opacity: String,
    pub species_police_color: String,
    pub species_police_size: String,
    pub gene_police_size: String,
    pub bezier: String,
}

Expand description

Structure Config: drawing config.

Fields§

§species_color: String§species_opacity: String§single_gene_color: String§gene_opacity: String§species_police_color: String§species_police_size: String§gene_police_size: String§bezier: String

Implementations§

source §

impl Config

source

pub fn new() -> Self

Examples found in repository ?

examples/read_phyloxml_bug.rs (line 6)

fn main() {
    let mut tree: ArenaTree<String> = ArenaTree::default();
    let options: Options = Options::new();
    let config: Config = Config::new();
    read_phyloxml("examples/newick.txt".to_string(), &mut tree);
    phyloxml_processing(&mut tree, &options, &config,"read_phyloxml.svg".to_string());
    println!("Please open output file 'read_phyloxml.svg' with your browser");
}

More examples

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examples/read_newick_bug.rs (line 6)

fn main() {
    let mut tree: ArenaTree<String> = ArenaTree::default();
    let options: Options = Options::new();
    let config: Config = Config::new();
    read_newick("examples/rec0.recphyloxml".to_string(), &mut tree);
    phyloxml_processing(&mut tree, &options, &config,"read_newick_clado.svg".to_string());
    println!("Please open output file 'read_newick_clado.svg' with your browser");

}

examples/read_recphyloxml_bug.rs (line 11)

fn main() {

    let transfers = vec![];
    let mut options: Options = Options::new();
    options.free_living = true;

    let config: Config = Config::new();
    // Version portrait
    let mut sp_tree: ArenaTree<String> = ArenaTree::default();
    let mut gene_trees:std::vec::Vec<ArenaTree<String>> = Vec::new();
    let mut global_roots: std::vec::Vec<usize> = Vec::new();
    read_recphyloxml_multi("examples/file_bug.recphylo".to_string(),
        &mut sp_tree, &mut gene_trees, &mut global_roots);
    recphyloxml_processing(&mut sp_tree, &mut gene_trees, &mut options, &config, true,
         &transfers, "read_recphyloxml_portrait.svg".to_string());
    println!("Please open output file 'read_recphyloxml_portrait.svg' with your browser");


}

examples/read_recphyloxml_prune.rs (line 9)

fn main() {

    let transfers = vec![];
    let mut options: Options = Options::new();
    let config: Config = Config::new();
    // Version portrait
    options.species_internal = true;
    let mut sp_tree: ArenaTree<String> = ArenaTree::default();
    let mut gene_trees:std::vec::Vec<ArenaTree<String>> = Vec::new();
    let mut global_roots: std::vec::Vec<usize> = Vec::new();
    read_recphyloxml_multi("examples/gene_parasite_page4.recphylo".to_string(),
        &mut sp_tree, &mut gene_trees, &mut global_roots);
    recphyloxml_processing(&mut sp_tree, &mut gene_trees, &mut options, &config, true,
         &transfers, "read_recphyloxml_portrait.svg".to_string());
    println!("Please open output file 'read_recphyloxml_portrait.svg' with your browser");




}

examples/read_recphyloxml_specloss.rs (line 12)

fn main() {

    // ============================================================================================
    // Version portrait
    let transfers = vec![];
    let mut options: Options = Options::new();
    let config: Config = Config::new();
    let mut sp_tree: ArenaTree<String> = ArenaTree::default();
    let mut gene_trees:std::vec::Vec<ArenaTree<String>> = Vec::new();
    let mut global_roots: std::vec::Vec<usize> = Vec::new();
    read_recphyloxml_multi("examples/example_obsolete_specloss.xml".to_string(),
        &mut sp_tree, &mut gene_trees, &mut global_roots);
    recphyloxml_processing(&mut sp_tree, &mut gene_trees, &mut options, &config, true,
         &transfers, "example_obsolete_specloss.svg".to_string());
    println!("Please open output file 'example_obsolete_specloss.svg' with your browser");

}

examples/read_recphyloxml_free_living.rs (line 9)

fn main() {

    let transfers = vec![];
    let mut options: Options = Options::new();
    let config: Config = Config::new();

    options.free_living = true;
    options.gene_internal = true;
    options.species_internal = true;


    let mut sp_tree: ArenaTree<String> = ArenaTree::default();
    let mut gene_trees:std::vec::Vec<ArenaTree<String>> = Vec::new();
    let mut global_roots: std::vec::Vec<usize> = Vec::new();
    read_recphyloxml_multi("examples/free_living_reconciliated.recphylo".to_string(),
        &mut sp_tree, &mut gene_trees, &mut global_roots);
    recphyloxml_processing(&mut sp_tree, &mut gene_trees, &mut options, &config, true,
         &transfers, "read_recphyloxml_free_living_reconciliated.svg".to_string());
    println!("Please open output file 'read_recphyloxml_free_living_reconciliated.svg' with your browser");

}