List of all items

Structs

• affine_wavefront::AffineWavefronts
• bindings::wfa::_IO_FILE
• bindings::wfa::_IO_codecvt
• bindings::wfa::_IO_marker
• bindings::wfa::_IO_wide_data
• bindings::wfa::_wavefront_aligner_t
• bindings::wfa::affine2p_penalties_t
• bindings::wfa::affine_penalties_t
• bindings::wfa::alignment_form_t
• bindings::wfa::alignment_system_t
• bindings::wfa::bt_block_t
• bindings::wfa::cigar_t
• bindings::wfa::heatmap_t
• bindings::wfa::linear_penalties_t
• bindings::wfa::mm_allocator_t
• bindings::wfa::profiler_counter_t
• bindings::wfa::profiler_timer_t
• bindings::wfa::timespec
• bindings::wfa::vector_t
• bindings::wfa::wavefront_align_status_t
• bindings::wfa::wavefront_aligner_attr_t
• bindings::wfa::wavefront_bialigner_t
• bindings::wfa::wavefront_components_t
• bindings::wfa::wavefront_heuristic_t
• bindings::wfa::wavefront_penalties_t
• bindings::wfa::wavefront_plot_attr_t
• bindings::wfa::wavefront_plot_t
• bindings::wfa::wavefront_pos_t
• bindings::wfa::wavefront_sequences_t
• bindings::wfa::wavefront_slab_t
• bindings::wfa::wavefront_t
• bindings::wfa::wf_backtrace_buffer_t

Enums

• affine_wavefront::AlignmentScope
• affine_wavefront::AlignmentSpan
• affine_wavefront::AlignmentStatus
• affine_wavefront::HeuristicStrategy
• affine_wavefront::MemoryMode

Functions

• bindings::wfa::wavefront_align
• bindings::wfa::wavefront_align_lambda
• bindings::wfa::wavefront_align_packed2bits
• bindings::wfa::wavefront_align_strerror
• bindings::wfa::wavefront_align_strerror_short
• bindings::wfa::wavefront_aligner_delete
• bindings::wfa::wavefront_aligner_get_size
• bindings::wfa::wavefront_aligner_init
• bindings::wfa::wavefront_aligner_maxtrim_cigar
• bindings::wfa::wavefront_aligner_new
• bindings::wfa::wavefront_aligner_print
• bindings::wfa::wavefront_aligner_print_conf
• bindings::wfa::wavefront_aligner_print_mode
• bindings::wfa::wavefront_aligner_print_scope
• bindings::wfa::wavefront_aligner_reap
• bindings::wfa::wavefront_aligner_set_alignment_end_to_end
• bindings::wfa::wavefront_aligner_set_alignment_extension
• bindings::wfa::wavefront_aligner_set_alignment_free_ends
• bindings::wfa::wavefront_aligner_set_heuristic_banded_adaptive
• bindings::wfa::wavefront_aligner_set_heuristic_banded_static
• bindings::wfa::wavefront_aligner_set_heuristic_none
• bindings::wfa::wavefront_aligner_set_heuristic_wfadaptive
• bindings::wfa::wavefront_aligner_set_heuristic_wfmash
• bindings::wfa::wavefront_aligner_set_heuristic_xdrop
• bindings::wfa::wavefront_aligner_set_heuristic_zdrop
• bindings::wfa::wavefront_aligner_set_max_alignment_steps
• bindings::wfa::wavefront_aligner_set_max_memory
• bindings::wfa::wavefront_aligner_set_max_num_threads
• bindings::wfa::wavefront_aligner_set_min_offsets_per_thread
• bindings::wfa::wavefront_allocate
• bindings::wfa::wavefront_bialigner_delete
• bindings::wfa::wavefront_bialigner_get_size
• bindings::wfa::wavefront_bialigner_new
• bindings::wfa::wavefront_bialigner_reap
• bindings::wfa::wavefront_bialigner_set_heuristic
• bindings::wfa::wavefront_bialigner_set_max_alignment_steps
• bindings::wfa::wavefront_bialigner_set_max_memory
• bindings::wfa::wavefront_bialigner_set_max_num_threads
• bindings::wfa::wavefront_bialigner_set_min_offsets_per_thread
• bindings::wfa::wavefront_bialigner_set_sequences_ascii
• bindings::wfa::wavefront_bialigner_set_sequences_bounds
• bindings::wfa::wavefront_bialigner_set_sequences_lambda
• bindings::wfa::wavefront_bialigner_set_sequences_packed2bits
• bindings::wfa::wavefront_components_allocate
• bindings::wfa::wavefront_components_clear
• bindings::wfa::wavefront_components_compact_bt_buffer
• bindings::wfa::wavefront_components_free
• bindings::wfa::wavefront_components_reap
• bindings::wfa::wavefront_components_resize
• bindings::wfa::wavefront_components_resize_null__victim
• bindings::wfa::wavefront_free
• bindings::wfa::wavefront_get_size
• bindings::wfa::wavefront_heuristic_clear
• bindings::wfa::wavefront_heuristic_cufoff
• bindings::wfa::wavefront_heuristic_print
• bindings::wfa::wavefront_heuristic_set_banded_adaptive
• bindings::wfa::wavefront_heuristic_set_banded_static
• bindings::wfa::wavefront_heuristic_set_none
• bindings::wfa::wavefront_heuristic_set_wfadaptive
• bindings::wfa::wavefront_heuristic_set_wfmash
• bindings::wfa::wavefront_heuristic_set_xdrop
• bindings::wfa::wavefront_heuristic_set_zdrop
• bindings::wfa::wavefront_init
• bindings::wfa::wavefront_init_null
• bindings::wfa::wavefront_init_victim
• bindings::wfa::wavefront_penalties_print
• bindings::wfa::wavefront_penalties_set_affine
• bindings::wfa::wavefront_penalties_set_affine2p
• bindings::wfa::wavefront_penalties_set_edit
• bindings::wfa::wavefront_penalties_set_indel
• bindings::wfa::wavefront_penalties_set_linear
• bindings::wfa::wavefront_plot
• bindings::wfa::wavefront_plot_delete
• bindings::wfa::wavefront_plot_new
• bindings::wfa::wavefront_plot_print
• bindings::wfa::wavefront_plot_resize
• bindings::wfa::wavefront_resize
• bindings::wfa::wavefront_sequences_allocate
• bindings::wfa::wavefront_sequences_cmp
• bindings::wfa::wavefront_sequences_free
• bindings::wfa::wavefront_sequences_get_pattern
• bindings::wfa::wavefront_sequences_get_text
• bindings::wfa::wavefront_sequences_init_ascii
• bindings::wfa::wavefront_sequences_init_lambda
• bindings::wfa::wavefront_sequences_init_packed2bits
• bindings::wfa::wavefront_sequences_set_bounds
• bindings::wfa::wavefront_set_limits
• bindings::wfa::wavefront_slab_allocate
• bindings::wfa::wavefront_slab_clear
• bindings::wfa::wavefront_slab_delete
• bindings::wfa::wavefront_slab_free
• bindings::wfa::wavefront_slab_get_size
• bindings::wfa::wavefront_slab_new
• bindings::wfa::wavefront_slab_reap
• bindings::wfa::wavefront_slab_set_mode

Type Aliases

• bindings::wfa::FILE
• bindings::wfa::_IO_lock_t
• bindings::wfa::__off64_t
• bindings::wfa::__off_t
• bindings::wfa::__syscall_slong_t
• bindings::wfa::__time_t
• bindings::wfa::affine2p_matrix_type
• bindings::wfa::alignment_match_funct_t
• bindings::wfa::alignment_scope_t
• bindings::wfa::alignment_span_t
• bindings::wfa::bt_block_idx_t
• bindings::wfa::distance_metric_t
• bindings::wfa::heatmap_type
• bindings::wfa::pcigar_t
• bindings::wfa::wavefront_align_mode_t
• bindings::wfa::wavefront_aligner_t
• bindings::wfa::wavefront_memory_t
• bindings::wfa::wavefront_status_type
• bindings::wfa::wf_heuristic_strategy
• bindings::wfa::wf_offset_t
• bindings::wfa::wf_sequences_mode_t
• bindings::wfa::wf_slab_mode_t

Statics

• bindings::wfa::wavefront_aligner_attr_default

Constants

• bindings::wfa::affine2p_matrix_type_affine2p_matrix_D1
• bindings::wfa::affine2p_matrix_type_affine2p_matrix_D2
• bindings::wfa::affine2p_matrix_type_affine2p_matrix_I1
• bindings::wfa::affine2p_matrix_type_affine2p_matrix_I2
• bindings::wfa::affine2p_matrix_type_affine2p_matrix_M
• bindings::wfa::alignment_scope_t_compute_alignment
• bindings::wfa::alignment_scope_t_compute_score
• bindings::wfa::alignment_span_t_alignment_end2end
• bindings::wfa::alignment_span_t_alignment_endsfree
• bindings::wfa::distance_metric_t_edit
• bindings::wfa::distance_metric_t_gap_affine
• bindings::wfa::distance_metric_t_gap_affine_2p
• bindings::wfa::distance_metric_t_gap_linear
• bindings::wfa::distance_metric_t_indel
• bindings::wfa::heatmap_type_heatmap_max
• bindings::wfa::heatmap_type_heatmap_min
• bindings::wfa::heatmap_type_heatmap_value
• bindings::wfa::wavefront_align_mode_t_wf_align_biwfa
• bindings::wfa::wavefront_align_mode_t_wf_align_biwfa_breakpoint_forward
• bindings::wfa::wavefront_align_mode_t_wf_align_biwfa_breakpoint_reverse
• bindings::wfa::wavefront_align_mode_t_wf_align_biwfa_subsidiary
• bindings::wfa::wavefront_align_mode_t_wf_align_regular
• bindings::wfa::wavefront_memory_t_wavefront_memory_high
• bindings::wfa::wavefront_memory_t_wavefront_memory_low
• bindings::wfa::wavefront_memory_t_wavefront_memory_med
• bindings::wfa::wavefront_memory_t_wavefront_memory_ultralow
• bindings::wfa::wavefront_status_type_wavefront_status_busy
• bindings::wfa::wavefront_status_type_wavefront_status_deallocated
• bindings::wfa::wavefront_status_type_wavefront_status_free
• bindings::wfa::wf_heuristic_strategy_wf_heuristic_banded_adaptive
• bindings::wfa::wf_heuristic_strategy_wf_heuristic_banded_static
• bindings::wfa::wf_heuristic_strategy_wf_heuristic_none
• bindings::wfa::wf_heuristic_strategy_wf_heuristic_wfadaptive
• bindings::wfa::wf_heuristic_strategy_wf_heuristic_wfmash
• bindings::wfa::wf_heuristic_strategy_wf_heuristic_xdrop
• bindings::wfa::wf_heuristic_strategy_wf_heuristic_zdrop
• bindings::wfa::wf_sequences_mode_t_wf_sequences_ascii
• bindings::wfa::wf_sequences_mode_t_wf_sequences_lambda
• bindings::wfa::wf_sequences_mode_t_wf_sequences_packed2bits
• bindings::wfa::wf_slab_mode_t_wf_slab_reuse
• bindings::wfa::wf_slab_mode_t_wf_slab_tight