[−] List of all items
Structs
- affine_wavefront::AffineWavefronts
- bindings::_IO_FILE
- bindings::_IO_codecvt
- bindings::_IO_marker
- bindings::_IO_wide_data
- bindings::affine_cell_t
- bindings::affine_penalties_t
- bindings::affine_table_t
- bindings::affine_wavefront_set
- bindings::affine_wavefront_t
- bindings::affine_wavefronts_penalties_t
- bindings::affine_wavefronts_reduction_t
- bindings::affine_wavefronts_t
- bindings::edit_cigar_t
- bindings::lineal_penalties_t
- bindings::mm_allocator_t
- bindings::profiler_counter_t
- bindings::profiler_timer_t
- bindings::timespec
- bindings::vector_t
- bindings::wavefronts_stats_t
- mm_allocator::MMAllocator
- penalties::AffinePenalties
Enums
Functions
- bindings::affine_penalties_mzero
- bindings::affine_penalties_shift
- bindings::affine_table_allocate
- bindings::affine_table_free
- bindings::affine_table_print
- bindings::affine_table_print_extended
- bindings::affine_wavefronts_align
- bindings::affine_wavefronts_allocate_wavefront
- bindings::affine_wavefronts_clear
- bindings::affine_wavefronts_delete
- bindings::affine_wavefronts_new_complete
- bindings::affine_wavefronts_new_reduced
- bindings::affine_wavefronts_penalties_init
- bindings::affine_wavefronts_reduction_set_dynamic
- bindings::affine_wavefronts_reduction_set_none
- bindings::edit_cigar_add_mismatches
- bindings::edit_cigar_allocate
- bindings::edit_cigar_check_alignment
- bindings::edit_cigar_clear
- bindings::edit_cigar_cmp
- bindings::edit_cigar_copy
- bindings::edit_cigar_free
- bindings::edit_cigar_get_matches
- bindings::edit_cigar_print
- bindings::edit_cigar_print_pretty
- bindings::edit_cigar_score_edit
- bindings::edit_cigar_score_gap_affine
- bindings::edit_cigar_score_gap_lineal
- bindings::mm_allocator_allocate
- bindings::mm_allocator_clear
- bindings::mm_allocator_delete
- bindings::mm_allocator_free
- bindings::mm_allocator_get_occupation
- bindings::mm_allocator_new
- bindings::mm_allocator_print
Typedefs
- bindings::FILE
- bindings::_IO_lock_t
- bindings::__int32_t
- bindings::__off64_t
- bindings::__off_t
- bindings::__syscall_slong_t
- bindings::__time_t
- bindings::__uint64_t
- bindings::awf_offset_t
- bindings::size_t
- bindings::wavefront_reduction_type
- bindings::wavefronts_penalties_strategy
Statics
Constants
- bindings::BUFFER_SIZE_128G
- bindings::BUFFER_SIZE_128K
- bindings::BUFFER_SIZE_128M
- bindings::BUFFER_SIZE_16G
- bindings::BUFFER_SIZE_16K
- bindings::BUFFER_SIZE_16M
- bindings::BUFFER_SIZE_1G
- bindings::BUFFER_SIZE_1K
- bindings::BUFFER_SIZE_1M
- bindings::BUFFER_SIZE_256G
- bindings::BUFFER_SIZE_256K
- bindings::BUFFER_SIZE_256M
- bindings::BUFFER_SIZE_2G
- bindings::BUFFER_SIZE_2K
- bindings::BUFFER_SIZE_2M
- bindings::BUFFER_SIZE_32G
- bindings::BUFFER_SIZE_32K
- bindings::BUFFER_SIZE_32M
- bindings::BUFFER_SIZE_4G
- bindings::BUFFER_SIZE_4K
- bindings::BUFFER_SIZE_4M
- bindings::BUFFER_SIZE_512K
- bindings::BUFFER_SIZE_512M
- bindings::BUFFER_SIZE_64G
- bindings::BUFFER_SIZE_64K
- bindings::BUFFER_SIZE_64M
- bindings::BUFFER_SIZE_8G
- bindings::BUFFER_SIZE_8K
- bindings::BUFFER_SIZE_8M
- bindings::wavefront_reduction_type_wavefronts_reduction_dynamic
- bindings::wavefront_reduction_type_wavefronts_reduction_none
- bindings::wavefronts_penalties_strategy_wavefronts_penalties_force_zero_match
- bindings::wavefronts_penalties_strategy_wavefronts_penalties_match_zero
- bindings::wavefronts_penalties_strategy_wavefronts_penalties_odd_pair_penalties
- bindings::wavefronts_penalties_strategy_wavefronts_penalties_shifted_penalties