[][src]Module libwfa::bindings

Structs

_IO_FILE
_IO_codecvt
_IO_marker
_IO_wide_data
affine_cell_t
affine_penalties_t
affine_table_t
affine_wavefront_set
affine_wavefront_t
affine_wavefronts_penalties_t
affine_wavefronts_reduction_t
affine_wavefronts_t
edit_cigar_t
lineal_penalties_t
mm_allocator_t
profiler_counter_t
profiler_timer_t
timespec
vector_t
wavefronts_stats_t

Constants

BUFFER_SIZE_1G
BUFFER_SIZE_1K
BUFFER_SIZE_1M
BUFFER_SIZE_2G
BUFFER_SIZE_2K
BUFFER_SIZE_2M
BUFFER_SIZE_4G
BUFFER_SIZE_4K
BUFFER_SIZE_4M
BUFFER_SIZE_8G
BUFFER_SIZE_8K
BUFFER_SIZE_8M
BUFFER_SIZE_16G
BUFFER_SIZE_16K
BUFFER_SIZE_16M
BUFFER_SIZE_32G
BUFFER_SIZE_32K
BUFFER_SIZE_32M
BUFFER_SIZE_64G
BUFFER_SIZE_64K
BUFFER_SIZE_64M
BUFFER_SIZE_128G
BUFFER_SIZE_128K
BUFFER_SIZE_128M
BUFFER_SIZE_256G
BUFFER_SIZE_256K
BUFFER_SIZE_256M
BUFFER_SIZE_512K
BUFFER_SIZE_512M
wavefront_reduction_type_wavefronts_reduction_dynamic
wavefront_reduction_type_wavefronts_reduction_none
wavefronts_penalties_strategy_wavefronts_penalties_force_zero_match
wavefronts_penalties_strategy_wavefronts_penalties_match_zero
wavefronts_penalties_strategy_wavefronts_penalties_odd_pair_penalties
wavefronts_penalties_strategy_wavefronts_penalties_shifted_penalties

Statics

stderr
stdout

Functions

affine_penalties_mzero
affine_penalties_shift
affine_table_allocate
affine_table_free
affine_table_print
affine_table_print_extended
affine_wavefronts_align
affine_wavefronts_allocate_wavefront
affine_wavefronts_clear
affine_wavefronts_delete
affine_wavefronts_new_complete
affine_wavefronts_new_reduced
affine_wavefronts_penalties_init
affine_wavefronts_reduction_set_dynamic
affine_wavefronts_reduction_set_none
edit_cigar_add_mismatches
edit_cigar_allocate
edit_cigar_check_alignment
edit_cigar_clear
edit_cigar_cmp
edit_cigar_copy
edit_cigar_free
edit_cigar_get_matches
edit_cigar_print
edit_cigar_print_pretty
edit_cigar_score_edit
edit_cigar_score_gap_affine
edit_cigar_score_gap_lineal
mm_allocator_allocate
mm_allocator_clear
mm_allocator_delete
mm_allocator_free
mm_allocator_get_occupation
mm_allocator_new
mm_allocator_print

Type Definitions

FILE
_IO_lock_t
__int32_t
__off64_t
__off_t
__syscall_slong_t
__time_t
__uint64_t
awf_offset_t
size_t
wavefront_reduction_type
wavefronts_penalties_strategy