List of all items

Structs

• datatypes::bytes_block_store::BytesBlockStore
• datatypes::directory::Directory
• datatypes::directory::DirectoryOnDisk
• datatypes::index_directory::IndexDirectory
• datatypes::masking::Masking
• datatypes::metadata::Metadata
• datatypes::parameters::Parameters
• datatypes::seq_loc::SeqLoc
• datatypes::seq_loc::SeqLocs
• datatypes::sequence_block::SequenceBlock
• datatypes::sequence_block::SequenceBlockCompressed
• datatypes::sequence_block::SequenceBlocks
• datatypes::string_block_store::StringBlockStore
• datatypes::structs::Header
• datatypes::structs::Sequence
• datatypes::u64_block_store::U64BlockStore
• dual_level_index::dual_index::DualIndex
• dual_level_index::dual_index::DualIndexBuilder
• dual_level_index::dual_index::DualIndexWriter
• prelude::Converter
• prelude::Fasta
• prelude::Fastq
• prelude::Sequences
• prelude::Sfasta
• prelude::SfastaParser
• utils::Bitpacked
• utils::CrossbeamReader

Enums

• datatypes::seq_loc::Loc
• datatypes::structs::CompressionType
• datatypes::structs::SeqMode
• dual_level_index::dual_index::Hashes
• masking::ml32bit::Ml32bit
• prelude::SeqMode
• utils::Packed
• utils::ReaderData

Traits

• datatypes::structs::ReadAndSeek
• datatypes::structs::ReadAndSeekAndSend
• datatypes::structs::T
• datatypes::structs::WriteAndSeek

Functions

• compression::naf_like::can_encode_2bit
• compression::naf_like::can_encode_4bit
• convenience::convert_fasta_file
• datatypes::sequence_block::zstd_encoder
• datatypes::structs::default_compression_level
• io::generic_open_file
• masking::ml32bit::Ml32bitPossibilities
• masking::ml32bit::_parse_ml32bit
• masking::ml32bit::convert_commands_to_u32
• masking::ml32bit::convert_commands_to_u32_uncompressed
• masking::ml32bit::convert_ranges_to_ml32bit
• masking::ml32bit::convert_u32_to_commands
• masking::ml32bit::convert_u32_to_commands2
• masking::ml32bit::get_masking_ranges
• masking::ml32bit::get_masking_ranges_previous
• masking::ml32bit::mask_sequence
• masking::ml32bit::pad_commands_to_u32
• prelude::count_fasta_entries
• prelude::generic_open_file
• prelude::summarize_fasta
• utils::bitpack_u32
• utils::capitalize_nucleotides
• utils::check_extension
• utils::complement_nucleotides
• utils::create_dict
• utils::get_index_filename
• utils::get_masking
• utils::unbitpack_u32