List of all items
Structs
- ComplementEvent
- SimpleEvent
- call::pairwise::PairEvent
- estimation::alignment_properties::AlignmentProperties
- estimation::alignment_properties::InsertSize
- estimation::effective_mutation_rate::Estimate
- model::ContinuousAlleleFreqs
- model::DiscreteAlleleFreqs
- model::PairCaller
- model::PairPileup
- model::SingleCaller
- model::SinglePileup
- model::evidence::Clips
- model::evidence::fragments::IndelEvidence
- model::evidence::observation::Observation
- model::evidence::reads::DeletionEmissionParams
- model::evidence::reads::EditDistanceEstimation
- model::evidence::reads::IndelEvidence
- model::evidence::reads::IndelGapParams
- model::evidence::reads::InsertionEmissionParams
- model::evidence::reads::NoneEvidence
- model::evidence::reads::ReadEmission
- model::evidence::reads::ReferenceEmissionParams
- model::evidence::reads::SNVEvidence
- model::likelihood::LatentVariableModel
- model::priors::flat::FlatNormalNormalModel
- model::priors::flat::FlatTumorNormalModel
- model::priors::infinite_sites_neutral_variation::InfiniteSitesNeutralVariationModel
- model::priors::single_cell_bulk::SingleCellBulkModel
- model::priors::tumor_normal::TumorNormalModel
- model::sample::RecordBuffer
- model::sample::Sample
- utils::ReferenceBuffer
Enums
- BCFError
- model::Variant
- model::VariantType
- model::evidence::observation::Evidence
- model::sample::RecordBufferError
- utils::Overlap
Traits
- Event
- model::AlleleFreqs
- model::evidence::reads::AbstractReadEvidence
- model::evidence::reads::RefBaseEmission
- model::priors::Model
- model::priors::PairModel
- model::priors::TrioModel
Functions
- call::pairwise::call
- estimation::effective_mutation_rate::estimate
- estimation::fdr::ev::control_fdr
- model::AlleleFreq
- model::evidence::fragments::estimate_insert_size
- model::evidence::fragments::isize_pmf
- model::evidence::fragments::n_fragment_positions
- model::evidence::max_indel
- model::evidence::observation::poisson_pmf
- model::evidence::read_len
- model::evidence::reads::prob_read_base
- model::evidence::reads::prob_read_base_miscall
- model::priors::single_cell_bulk::prob_rho
- model::sample::isize_density
- model::sample::isize_density_louis
- model::sample::isize_mixture_density_louis
- model::sample::isize_pmf
- utils::collect_prob_dist
- utils::collect_variants
- utils::filter_by_threshold