Crate libhmmer_sys

Expand description

A light rust wrapper around libhmmer and libeasel.

Structs§

Constants§

Functions§

esl_CCompare^⚠
esl_DCompare^⚠
esl_DCompareAbs^⚠
esl_DCompareNew^⚠
esl_FCompare^⚠
esl_FCompareAbs^⚠
esl_FCompareNew^⚠
esl_FileConcat^⚠
esl_FileEnvOpen^⚠
esl_FileExists^⚠
esl_FileNewSuffix^⚠
esl_FileTail^⚠
esl_Free2D^⚠
esl_Free3D^⚠
esl_abc_CDealign^⚠
esl_abc_ConvertDegen2X^⚠
esl_abc_CreateDsq^⚠
esl_abc_DAvgScVec^⚠
esl_abc_DAvgScore^⚠
esl_abc_DCount^⚠
esl_abc_DExpectScVec^⚠
esl_abc_DExpectScore^⚠
esl_abc_DecodeType^⚠
esl_abc_Digitize^⚠
esl_abc_EncodeType^⚠
esl_abc_EncodeTypeMem^⚠
esl_abc_FAvgScVec^⚠
esl_abc_FAvgScore^⚠
esl_abc_FCount^⚠
esl_abc_FExpectScVec^⚠
esl_abc_FExpectScore^⚠
esl_abc_GuessAlphabet^⚠
esl_abc_IAvgScVec^⚠
esl_abc_IAvgScore^⚠
esl_abc_IExpectScVec^⚠
esl_abc_IExpectScore^⚠
esl_abc_Match^⚠
esl_abc_Textize^⚠
esl_abc_TextizeN^⚠
esl_abc_ValidateSeq^⚠
esl_abc_ValidateType^⚠
esl_abc_XDealign^⚠
esl_abc_dsqcat^⚠
esl_abc_dsqcat_noalloc^⚠
esl_abc_dsqcpy^⚠
esl_abc_dsqdup^⚠
esl_abc_dsqlen^⚠
esl_abc_dsqrlen^⚠
esl_abc_revcomp^⚠
esl_alphabet_Create^⚠
esl_alphabet_CreateCustom^⚠
esl_alphabet_Destroy^⚠
esl_alphabet_SetCaseInsensitive^⚠
esl_alphabet_SetDegeneracy^⚠
esl_alphabet_SetEquiv^⚠
esl_alphabet_SetIgnored^⚠
esl_alphabet_Sizeof^⚠
esl_banner^⚠
esl_bitfield_Count^⚠
esl_bitfield_Create^⚠
esl_bitfield_Destroy^⚠
esl_buffer_Close^⚠
esl_buffer_FetchLine^⚠
esl_buffer_FetchLineAsStr^⚠
esl_buffer_FetchToken^⚠
esl_buffer_FetchTokenAsStr^⚠
esl_buffer_Get^⚠
esl_buffer_GetLine^⚠
esl_buffer_GetOffset^⚠
esl_buffer_GetToken^⚠
esl_buffer_Open^⚠
esl_buffer_OpenFile^⚠
esl_buffer_OpenMem^⚠
esl_buffer_OpenPipe^⚠
esl_buffer_OpenStream^⚠
esl_buffer_RaiseAnchor^⚠
esl_buffer_Read^⚠
esl_buffer_Set^⚠
esl_buffer_SetAnchor^⚠
esl_buffer_SetOffset^⚠
esl_buffer_SetStableAnchor^⚠
esl_byteswap^⚠
esl_dataheader^⚠
esl_dmatrix_Clone^⚠
esl_dmatrix_Compare^⚠
esl_dmatrix_CompareAbs^⚠
esl_dmatrix_Copy^⚠
esl_dmatrix_Create^⚠
esl_dmatrix_CreateUpper^⚠
esl_dmatrix_Destroy^⚠
esl_dmatrix_Dump^⚠
esl_dmatrix_PlotHeatMap^⚠
esl_dmatrix_Set^⚠
esl_dmatrix_SetIdentity^⚠
esl_dmatrix_SetZero^⚠
esl_dmx_Add^⚠
esl_dmx_AddScale^⚠
esl_dmx_Exp^⚠
esl_dmx_FrobeniusNorm^⚠
esl_dmx_Invert^⚠
esl_dmx_LUP_decompose^⚠
esl_dmx_LU_separate^⚠
esl_dmx_Max^⚠
esl_dmx_Min^⚠
esl_dmx_MinMax^⚠
esl_dmx_Multiply^⚠
esl_dmx_Permute_PA^⚠
esl_dmx_Scale^⚠
esl_dmx_Sum^⚠
esl_dmx_Transpose^⚠
esl_exception^⚠
esl_exception_ResetDefaultHandler^⚠
esl_exception_SetHandler^⚠
esl_fail^⚠
esl_fatal^⚠
esl_fgets^⚠
esl_file_Extension^⚠
esl_fileparser_Close^⚠
esl_fileparser_Create^⚠
esl_fileparser_CreateMapped^⚠
esl_fileparser_Destroy^⚠
esl_fileparser_GetRemainingLine^⚠
esl_fileparser_GetToken^⚠
esl_fileparser_GetTokenOnLine^⚠
esl_fileparser_NextLine^⚠
esl_fileparser_NextLinePeeked^⚠
esl_fileparser_Open^⚠
esl_fileparser_SetCommentChar^⚠
esl_fprintf^⚠
esl_fread_i16^⚠
esl_fread_i32^⚠
esl_fread_i64^⚠
esl_fread_offset^⚠
esl_fread_u16^⚠
esl_fread_u32^⚠
esl_fread_u64^⚠
esl_free^⚠
esl_fwrite_i16^⚠
esl_fwrite_i32^⚠
esl_fwrite_i64^⚠
esl_fwrite_offset^⚠
esl_fwrite_u16^⚠
esl_fwrite_u32^⚠
esl_fwrite_u64^⚠
esl_getcwd^⚠
esl_getopts_Create^⚠
esl_getopts_CreateDefaultApp^⚠
esl_getopts_Destroy^⚠
esl_getopts_Dump^⚠
esl_getopts_Reuse^⚠
esl_histogram_Add^⚠
esl_histogram_Create^⚠
esl_histogram_CreateFull^⚠
esl_histogram_DeclareCensoring^⚠
esl_histogram_DeclareRounding^⚠
esl_histogram_Destroy^⚠
esl_histogram_GetData^⚠
esl_histogram_GetRank^⚠
esl_histogram_GetTail^⚠
esl_histogram_GetTailByMass^⚠
esl_histogram_Goodness^⚠
esl_histogram_Plot^⚠
esl_histogram_PlotQQ^⚠
esl_histogram_PlotSurvival^⚠
esl_histogram_Score2Bin^⚠
esl_histogram_SetExpect^⚠
esl_histogram_SetExpectedTail^⚠
esl_histogram_SetTail^⚠
esl_histogram_SetTailByMass^⚠
esl_histogram_Write^⚠
esl_hmm_Backward^⚠
esl_hmm_Clone^⚠
esl_hmm_Configure^⚠
esl_hmm_Create^⚠
esl_hmm_Destroy^⚠
esl_hmm_Emit^⚠
esl_hmm_Forward^⚠
esl_hmm_SetDegeneracies^⚠
esl_hmx_Create^⚠
esl_hmx_Destroy^⚠
esl_hmx_GrowTo^⚠
esl_hton16^⚠
esl_hton32^⚠
esl_hton64^⚠
esl_keyhash_Clone^⚠
esl_keyhash_Create^⚠
esl_keyhash_CreateCustom^⚠
esl_keyhash_Destroy^⚠
esl_keyhash_Dump^⚠
esl_keyhash_Get^⚠
esl_keyhash_GetNumber^⚠
esl_keyhash_Lookup^⚠
esl_keyhash_Reuse^⚠
esl_keyhash_Sizeof^⚠
esl_keyhash_Store^⚠
esl_mixdchlet_Compare^⚠
esl_mixdchlet_Create^⚠
esl_mixdchlet_Destroy^⚠
esl_mixdchlet_Dump^⚠
esl_mixdchlet_Fit^⚠
esl_mixdchlet_MPParameters^⚠
esl_mixdchlet_Read^⚠
esl_mixdchlet_Sample^⚠
esl_mixdchlet_Validate^⚠
esl_mixdchlet_Write^⚠
esl_mixdchlet_WriteJSON^⚠
esl_mixdchlet_logp_c^⚠
esl_msa_AddComment^⚠
esl_msa_AddGF^⚠
esl_msa_AddGS^⚠
esl_msa_AppendGC^⚠
esl_msa_AppendGR^⚠
esl_msa_CheckUniqueNames^⚠
esl_msa_Checksum^⚠
esl_msa_Clone^⚠
esl_msa_ColumnSubset^⚠
esl_msa_Compare^⚠
esl_msa_CompareMandatory^⚠
esl_msa_CompareOptional^⚠
esl_msa_ConvertDegen2X^⚠
esl_msa_Copy^⚠
esl_msa_Create^⚠
esl_msa_CreateDigital^⚠
esl_msa_CreateFromString^⚠
esl_msa_Destroy^⚠
esl_msa_Digitize^⚠
esl_msa_Expand^⚠
esl_msa_FlushLeftInserts^⚠
esl_msa_FormatAccession^⚠
esl_msa_FormatAuthor^⚠
esl_msa_FormatDesc^⚠
esl_msa_FormatName^⚠
esl_msa_FormatSeqAccession^⚠
esl_msa_FormatSeqDescription^⚠
esl_msa_FormatSeqName^⚠
esl_msa_GuessAlphabet^⚠
esl_msa_Hash^⚠
esl_msa_MarkFragments^⚠
esl_msa_MarkFragments_old^⚠
esl_msa_MinimGaps^⚠
esl_msa_MinimGapsText^⚠
esl_msa_NoGaps^⚠
esl_msa_NoGapsText^⚠
esl_msa_ReasonableRF^⚠
esl_msa_RemoveBrokenBasepairs^⚠
esl_msa_RemoveBrokenBasepairsFromSS^⚠
esl_msa_ReverseComplement^⚠
esl_msa_Sample^⚠
esl_msa_SequenceSubset^⚠
esl_msa_SetAccession^⚠
esl_msa_SetAuthor^⚠
esl_msa_SetDefaultWeights^⚠
esl_msa_SetDesc^⚠
esl_msa_SetName^⚠
esl_msa_SetSeqAccession^⚠
esl_msa_SetSeqDescription^⚠
esl_msa_SetSeqName^⚠
esl_msa_SymConvert^⚠
esl_msa_Textize^⚠
esl_msa_Validate^⚠
esl_msafile_Close^⚠
esl_msafile_DecodeFormat^⚠
esl_msafile_EncodeFormat^⚠
esl_msafile_GetLine^⚠
esl_msafile_GuessAlphabet^⚠
esl_msafile_GuessFileFormat^⚠
esl_msafile_IsMultiRecord^⚠
esl_msafile_Open^⚠
esl_msafile_OpenBuffer^⚠
esl_msafile_OpenFailure^⚠
esl_msafile_OpenMem^⚠
esl_msafile_PositionByKey^⚠
esl_msafile_PutLine^⚠
esl_msafile_Read^⚠
esl_msafile_ReadFailure^⚠
esl_msafile_SetDigital^⚠
esl_msafile_Write^⚠
esl_msafile_a2m_GuessAlphabet^⚠
esl_msafile_a2m_Read^⚠
esl_msafile_a2m_SetInmap^⚠
esl_msafile_a2m_Write^⚠
esl_msafile_afa_GuessAlphabet^⚠
esl_msafile_afa_Read^⚠
esl_msafile_afa_SetInmap^⚠
esl_msafile_afa_Write^⚠
esl_msafile_clustal_GuessAlphabet^⚠
esl_msafile_clustal_Read^⚠
esl_msafile_clustal_SetInmap^⚠
esl_msafile_clustal_Write^⚠
esl_msafile_fmtdata_Copy^⚠
esl_msafile_fmtdata_Init^⚠
esl_msafile_phylip_CheckFileFormat^⚠
esl_msafile_phylip_GuessAlphabet^⚠
esl_msafile_phylip_Read^⚠
esl_msafile_phylip_SetInmap^⚠
esl_msafile_phylip_Write^⚠
esl_msafile_psiblast_GuessAlphabet^⚠
esl_msafile_psiblast_Read^⚠
esl_msafile_psiblast_SetInmap^⚠
esl_msafile_psiblast_Write^⚠
esl_msafile_selex_GuessAlphabet^⚠
esl_msafile_selex_Read^⚠
esl_msafile_selex_SetInmap^⚠
esl_msafile_selex_Write^⚠
esl_msafile_stockholm_GuessAlphabet^⚠
esl_msafile_stockholm_Read^⚠
esl_msafile_stockholm_SetInmap^⚠
esl_msafile_stockholm_Write^⚠
esl_newssi_AddAlias^⚠
esl_newssi_AddFile^⚠
esl_newssi_AddKey^⚠
esl_newssi_Close^⚠
esl_newssi_Open^⚠
esl_newssi_SetSubseq^⚠
esl_newssi_Write^⚠
esl_nonfatal_handler^⚠
esl_ntoh16^⚠
esl_ntoh32^⚠
esl_ntoh64^⚠
esl_opt_ArgNumber^⚠
esl_opt_DisplayHelp^⚠
esl_opt_GetArg^⚠
esl_opt_GetBoolean^⚠
esl_opt_GetChar^⚠
esl_opt_GetInteger^⚠
esl_opt_GetReal^⚠
esl_opt_GetSetter^⚠
esl_opt_GetString^⚠
esl_opt_IsDefault^⚠
esl_opt_IsOn^⚠
esl_opt_IsUsed^⚠
esl_opt_ProcessCmdline^⚠
esl_opt_ProcessConfigfile^⚠
esl_opt_ProcessEnvironment^⚠
esl_opt_ProcessSpoof^⚠
esl_opt_SpoofCmdline^⚠
esl_opt_VerifyConfig^⚠
esl_permutation_Create^⚠
esl_permutation_Destroy^⚠
esl_permutation_Dump^⚠
esl_permutation_Reuse^⚠
esl_printf^⚠
esl_rand64^⚠
esl_rand64_Create^⚠
esl_rand64_Deal^⚠
esl_rand64_Destroy^⚠
esl_rand64_Dump^⚠
esl_rand64_GetSeed^⚠
esl_rand64_Init^⚠
esl_rand64_Roll^⚠
esl_rand64_double^⚠
esl_rand64_double_closed^⚠
esl_rand64_double_open^⚠
esl_random^⚠
esl_random_uint32^⚠
esl_randomness_Create^⚠
esl_randomness_CreateFast^⚠
esl_randomness_CreateTimeseeded^⚠
esl_randomness_Destroy^⚠
esl_randomness_Dump^⚠
esl_randomness_GetSeed^⚠
esl_randomness_Init^⚠
esl_rnd_DChoose^⚠
esl_rnd_DChooseCDF^⚠
esl_rnd_Deal^⚠
esl_rnd_Dirichlet^⚠
esl_rnd_FChoose^⚠
esl_rnd_FChooseCDF^⚠
esl_rnd_Gamma^⚠
esl_rnd_Gaussian^⚠
esl_rnd_UniformPositive^⚠
esl_rnd_floatstring^⚠
esl_rnd_mem^⚠
esl_rnd_mix3^⚠
esl_rsq_CMarkov0^⚠
esl_rsq_CMarkov1^⚠
esl_rsq_CReverse^⚠
esl_rsq_CShuffle^⚠
esl_rsq_CShuffleDP^⚠
esl_rsq_CShuffleKmers^⚠
esl_rsq_CShuffleWindows^⚠
esl_rsq_IID^⚠
esl_rsq_Sample^⚠
esl_rsq_SampleDirty^⚠
esl_rsq_XMarkov0^⚠
esl_rsq_XMarkov1^⚠
esl_rsq_XReverse^⚠
esl_rsq_XShuffle^⚠
esl_rsq_XShuffleDP^⚠
esl_rsq_XShuffleKmers^⚠
esl_rsq_XShuffleWindows^⚠
esl_rsq_fIID^⚠
esl_rsq_xIID^⚠
esl_rsq_xfIID^⚠
esl_scorematrix_Clone^⚠
esl_scorematrix_Compare^⚠
esl_scorematrix_CompareCanon^⚠
esl_scorematrix_Copy^⚠
esl_scorematrix_Create^⚠
esl_scorematrix_Destroy^⚠
esl_scorematrix_ExpectedScore^⚠
esl_scorematrix_IsSymmetric^⚠
esl_scorematrix_JointToConditionalOnQuery^⚠
esl_scorematrix_Max^⚠
esl_scorematrix_Min^⚠
esl_scorematrix_Probify^⚠
esl_scorematrix_ProbifyGivenBG^⚠
esl_scorematrix_Read^⚠
esl_scorematrix_RelEntropy^⚠
esl_scorematrix_Set^⚠
esl_scorematrix_SetFromProbs^⚠
esl_scorematrix_SetIdentity^⚠
esl_scorematrix_SetWAG^⚠
esl_scorematrix_Write^⚠
esl_sprintf^⚠
esl_sq_AppendDesc^⚠
esl_sq_BlockGrowTo^⚠
esl_sq_BlockReallocSequences^⚠
esl_sq_CAddResidue^⚠
esl_sq_Checksum^⚠
esl_sq_Compare^⚠
esl_sq_ConvertDegen2X^⚠
esl_sq_Copy^⚠
esl_sq_CountResidues^⚠
esl_sq_Create^⚠
esl_sq_CreateBlock^⚠
esl_sq_CreateDigital^⚠
esl_sq_CreateDigitalBlock^⚠
esl_sq_CreateDigitalFrom^⚠
esl_sq_CreateFrom^⚠
esl_sq_Destroy^⚠
esl_sq_DestroyBlock^⚠
esl_sq_Digitize^⚠
esl_sq_FetchFromMSA^⚠
esl_sq_FormatAccession^⚠
esl_sq_FormatDesc^⚠
esl_sq_FormatName^⚠
esl_sq_FormatSource^⚠
esl_sq_GetFromMSA^⚠
esl_sq_Grow^⚠
esl_sq_GrowTo^⚠
esl_sq_GuessAlphabet^⚠
esl_sq_IsDigital^⚠
esl_sq_IsText^⚠
esl_sq_Reuse^⚠
esl_sq_ReverseComplement^⚠
esl_sq_Sample^⚠
esl_sq_SetAccession^⚠
esl_sq_SetCoordComplete^⚠
esl_sq_SetDesc^⚠
esl_sq_SetName^⚠
esl_sq_SetSource^⚠
esl_sq_Textize^⚠
esl_sq_XAddResidue^⚠
esl_sqascii_Open^⚠
esl_sqascii_Parse^⚠
esl_sqascii_WriteFasta^⚠
esl_sqfile_Cache^⚠
esl_sqfile_Close^⚠
esl_sqfile_Free^⚠
esl_sqfile_GetErrorBuf^⚠
esl_sqfile_GuessAlphabet^⚠
esl_sqfile_IsRewindable^⚠
esl_sqfile_Open^⚠
esl_sqfile_OpenDigital^⚠
esl_sqfile_OpenSSI^⚠
esl_sqfile_Position^⚠
esl_sqfile_PositionByKey^⚠
esl_sqfile_PositionByNumber^⚠
esl_sqfile_SetDigital^⚠
esl_sqio_AcceptAs^⚠
esl_sqio_DecodeFormat^⚠
esl_sqio_Echo^⚠
esl_sqio_EncodeFormat^⚠
esl_sqio_Fetch^⚠
esl_sqio_FetchInfo^⚠
esl_sqio_FetchSubseq^⚠
esl_sqio_Ignore^⚠
esl_sqio_IsAlignment^⚠
esl_sqio_Parse^⚠
esl_sqio_Read^⚠
esl_sqio_ReadBlock^⚠
esl_sqio_ReadInfo^⚠
esl_sqio_ReadSequence^⚠
esl_sqio_ReadWindow^⚠
esl_sqio_Write^⚠
esl_sqncbi_Open^⚠
esl_ssi_Close^⚠
esl_ssi_FileInfo^⚠
esl_ssi_FindName^⚠
esl_ssi_FindNumber^⚠
esl_ssi_FindSubseq^⚠
esl_ssi_Open^⚠
esl_stopwatch_Create^⚠
esl_stopwatch_Destroy^⚠
esl_stopwatch_Display^⚠
esl_stopwatch_GetElapsed^⚠
esl_stopwatch_Include^⚠
esl_stopwatch_Start^⚠
esl_stopwatch_Stop^⚠
esl_str_GetMaxWidth^⚠
esl_str_IsBlank^⚠
esl_str_IsInteger^⚠
esl_str_IsReal^⚠
esl_strcat^⚠
esl_strchop^⚠
esl_strcmp^⚠
esl_strdealign^⚠
esl_strdup^⚠
esl_strmapcat^⚠
esl_strmapcat_noalloc^⚠
esl_strtok^⚠
esl_strtok_adv^⚠
esl_tmpfile^⚠
esl_tmpfile_named^⚠
esl_usage^⚠
esl_vsprintf^⚠
p7_AminoFrequencies^⚠
p7_Backward^⚠
p7_BackwardParser^⚠
p7_Builder^⚠
p7_Builder_MaxLength^⚠
p7_Calibrate^⚠
p7_CoreEmit^⚠
p7_CreateDefaultApp^⚠
p7_Decoding^⚠
p7_Die^⚠
p7_DomainDecoding^⚠
p7_EntropyWeight^⚠
p7_EntropyWeight_exp^⚠
p7_FLogsum^⚠
p7_FLogsumError^⚠
p7_FLogsumInit^⚠
p7_Fail^⚠
p7_Fastmodelmaker^⚠
p7_Forward^⚠
p7_ForwardParser^⚠
p7_GBackward^⚠
p7_GDecoding^⚠
p7_GDomainDecoding^⚠
p7_GForward^⚠
p7_GHybrid^⚠
p7_GMSV^⚠
p7_GMSV_longtarget^⚠
p7_GNull2_ByExpectation^⚠
p7_GNull2_ByTrace^⚠
p7_GOATrace^⚠
p7_GOptimalAccuracy^⚠
p7_GStochasticTrace^⚠
p7_GTrace^⚠
p7_GViterbi^⚠
p7_GViterbi_longtarget^⚠
p7_Handmodelmaker^⚠: Routines in HMMER’s exposed API.
p7_ILogsum^⚠
p7_ILogsumInit^⚠
p7_Lambda^⚠
p7_MSVFilter^⚠
p7_MSVMu^⚠
p7_MeanForwardScore^⚠
p7_MeanMatchEntropy^⚠
p7_MeanMatchInfo^⚠
p7_MeanMatchRelativeEntropy^⚠
p7_MeanPositionRelativeEntropy^⚠
p7_Null2_ByExpectation^⚠
p7_Null2_ByTrace^⚠
p7_OATrace^⚠
p7_OptimalAccuracy^⚠
p7_ParameterEstimation^⚠
p7_Pipeline^⚠
p7_Pipeline_LongTarget^⚠
p7_ProfileConfig^⚠
p7_ProfileEmit^⚠
p7_ReconfigLength^⚠
p7_ReconfigMultihit^⚠
p7_ReconfigUnihit^⚠
p7_SSVFM_longlarget^⚠
p7_SSVFilter^⚠
p7_SSVFilter_longtarget^⚠
p7_Seqmodel^⚠
p7_SingleBuilder^⚠
p7_StochasticTrace^⚠
p7_Tau^⚠
p7_ViterbiFilter^⚠
p7_ViterbiFilter_longtarget^⚠
p7_ViterbiMu^⚠
p7_ViterbiScore^⚠
p7_alidisplay_Backconvert^⚠
p7_alidisplay_Clone^⚠
p7_alidisplay_Compare^⚠
p7_alidisplay_Create^⚠
p7_alidisplay_Create_empty^⚠
p7_alidisplay_DecodePostProb^⚠
p7_alidisplay_Deserialize^⚠
p7_alidisplay_Deserialize_old^⚠
p7_alidisplay_Destroy^⚠
p7_alidisplay_Dump^⚠
p7_alidisplay_EncodeAliPostProb^⚠
p7_alidisplay_EncodePostProb^⚠
p7_alidisplay_Print^⚠
p7_alidisplay_Sample^⚠
p7_alidisplay_Serialize^⚠
p7_alidisplay_Serialize_old^⚠
p7_alidisplay_Sizeof^⚠
p7_banner^⚠
p7_bg_Clone^⚠
p7_bg_Create^⚠
p7_bg_CreateUniform^⚠
p7_bg_Destroy^⚠
p7_bg_Dump^⚠
p7_bg_FilterScore^⚠
p7_bg_NullOne^⚠
p7_bg_Read^⚠
p7_bg_SetFilter^⚠
p7_bg_SetLength^⚠
p7_bg_Write^⚠
p7_builder_Create^⚠
p7_builder_Destroy^⚠
p7_builder_LoadScoreSystem^⚠
p7_builder_SetScoreSystem^⚠
p7_closelog^⚠
p7_domain_Compare^⚠
p7_domain_Create_empty^⚠
p7_domain_Deserialize^⚠
p7_domain_Destroy^⚠
p7_domain_Serialize^⚠
p7_domain_TestSample^⚠
p7_domaindef_ByPosteriorHeuristics^⚠
p7_domaindef_ByViterbi^⚠
p7_domaindef_Create^⚠
p7_domaindef_Destroy^⚠
p7_domaindef_DumpPosteriors^⚠
p7_domaindef_Fetch^⚠
p7_domaindef_GrowTo^⚠
p7_domaindef_Reuse^⚠
p7_emit_FancyConsensus^⚠
p7_emit_SimpleConsensus^⚠
p7_gmx_Compare^⚠
p7_gmx_Create^⚠
p7_gmx_Destroy^⚠
p7_gmx_Dump^⚠
p7_gmx_DumpWindow^⚠
p7_gmx_GrowTo^⚠
p7_gmx_Reuse^⚠
p7_gmx_Sizeof^⚠
p7_h2io_WriteASCII^⚠
p7_hit_Compare^⚠
p7_hit_Create_empty^⚠
p7_hit_Deserialize^⚠
p7_hit_Destroy^⚠
p7_hit_Serialize^⚠
p7_hit_TestSample^⚠
p7_hmm_AppendComlog^⚠
p7_hmm_CalculateOccupancy^⚠
p7_hmm_Clone^⚠
p7_hmm_Compare^⚠
p7_hmm_CompositionKLD^⚠
p7_hmm_CopyParameters^⚠
p7_hmm_Create^⚠
p7_hmm_CreateBody^⚠
p7_hmm_CreateShell^⚠
p7_hmm_DecodeStatetype^⚠
p7_hmm_Destroy^⚠
p7_hmm_Dump^⚠
p7_hmm_EncodeStatetype^⚠
p7_hmm_Renormalize^⚠
p7_hmm_Sample^⚠
p7_hmm_SampleEnumerable^⚠
p7_hmm_SampleUngapped^⚠
p7_hmm_SampleUniform^⚠
p7_hmm_Scale^⚠
p7_hmm_ScaleExponential^⚠
p7_hmm_ScoreDataClone^⚠
p7_hmm_ScoreDataComputeRest^⚠
p7_hmm_ScoreDataCreate^⚠
p7_hmm_ScoreDataDestroy^⚠
p7_hmm_SetAccession^⚠
p7_hmm_SetComposition^⚠
p7_hmm_SetConsensus^⚠
p7_hmm_SetCtime^⚠
p7_hmm_SetDescription^⚠
p7_hmm_SetName^⚠
p7_hmm_Validate^⚠
p7_hmm_Zero^⚠
p7_hmm_initWindows^⚠
p7_hmm_newWindow^⚠
p7_hmmfile_Close^⚠
p7_hmmfile_CreateLock^⚠
p7_hmmfile_Open^⚠
p7_hmmfile_OpenBuffer^⚠
p7_hmmfile_OpenE^⚠
p7_hmmfile_OpenENoDB^⚠
p7_hmmfile_OpenNoDB^⚠
p7_hmmfile_Position^⚠
p7_hmmfile_PositionByKey^⚠
p7_hmmfile_Read^⚠
p7_hmmfile_WriteASCII^⚠
p7_hmmfile_WriteBinary^⚠
p7_hmmfile_WriteToString^⚠
p7_hmmwindow_init^⚠
p7_hmmwindow_new^⚠
p7_island_Viterbi^⚠
p7_nontranslated_alidisplay_Print^⚠
p7_null3_score^⚠
p7_null3_windowed_score^⚠
p7_omx_Create^⚠: Declarations of the external API.
p7_omx_Destroy^⚠
p7_omx_DumpFBRow^⚠
p7_omx_DumpMFRow^⚠
p7_omx_DumpVFRow^⚠
p7_omx_FDeconvert^⚠
p7_omx_GrowTo^⚠
p7_omx_Reuse^⚠
p7_omx_SetDumpMode^⚠
p7_openlog^⚠
p7_oprofile_Clone^⚠
p7_oprofile_Compare^⚠
p7_oprofile_Convert^⚠
p7_oprofile_Copy^⚠
p7_oprofile_Create^⚠
p7_oprofile_CreateBlock^⚠
p7_oprofile_Destroy^⚠
p7_oprofile_DestroyBlock^⚠
p7_oprofile_Dump^⚠
p7_oprofile_GetFwdEmissionArray^⚠
p7_oprofile_GetFwdEmissionScoreArray^⚠
p7_oprofile_GetFwdTransitionArray^⚠
p7_oprofile_GetSSVEmissionScoreArray^⚠
p7_oprofile_IsLocal^⚠
p7_oprofile_Position^⚠
p7_oprofile_ReadBlockMSV^⚠
p7_oprofile_ReadInfoMSV^⚠
p7_oprofile_ReadMSV^⚠
p7_oprofile_ReadRest^⚠
p7_oprofile_ReconfigLength^⚠
p7_oprofile_ReconfigMSVLength^⚠
p7_oprofile_ReconfigMultihit^⚠
p7_oprofile_ReconfigRestLength^⚠
p7_oprofile_ReconfigUnihit^⚠
p7_oprofile_Sample^⚠
p7_oprofile_Sizeof^⚠
p7_oprofile_UpdateFwdEmissionScores^⚠
p7_oprofile_UpdateMSVEmissionScores^⚠
p7_oprofile_UpdateVitEmissionScores^⚠
p7_oprofile_Write^⚠
p7_pipeline_Create^⚠
p7_pipeline_Destroy^⚠
p7_pipeline_Merge^⚠
p7_pipeline_Reuse^⚠
p7_pli_DomainIncludable^⚠
p7_pli_DomainReportable^⚠
p7_pli_ExtendAndMergeWindows^⚠
p7_pli_NewModel^⚠
p7_pli_NewModelThresholds^⚠
p7_pli_NewSeq^⚠
p7_pli_Statistics^⚠
p7_pli_TargetIncludable^⚠
p7_pli_TargetReportable^⚠
p7_prior_CreateAmino^⚠
p7_prior_CreateLaplace^⚠
p7_prior_CreateNucleic^⚠
p7_prior_Destroy^⚠
p7_profile_Clone^⚠
p7_profile_Compare^⚠
p7_profile_Copy^⚠
p7_profile_Create^⚠
p7_profile_Destroy^⚠
p7_profile_GetT^⚠
p7_profile_IsLocal^⚠
p7_profile_IsMultihit^⚠
p7_profile_Reuse^⚠
p7_profile_SameAsMF^⚠
p7_profile_SameAsVF^⚠
p7_profile_SetNullEmissions^⚠
p7_profile_Sizeof^⚠
p7_profile_Validate^⚠
p7_spensemble_Add^⚠
p7_spensemble_Cluster^⚠
p7_spensemble_Create^⚠
p7_spensemble_Destroy^⚠
p7_spensemble_GetClusterCoords^⚠
p7_spensemble_Reuse^⚠
p7_syslog^⚠
p7_tophits_Add^⚠
p7_tophits_AliScores^⚠
p7_tophits_Alignment^⚠
p7_tophits_CompareRanking^⚠
p7_tophits_ComputeNhmmerEvalues^⚠
p7_tophits_Create^⚠
p7_tophits_CreateNextHit^⚠
p7_tophits_Destroy^⚠
p7_tophits_Domains^⚠
p7_tophits_GetMaxAccessionLength^⚠
p7_tophits_GetMaxNameLength^⚠
p7_tophits_GetMaxPositionLength^⚠
p7_tophits_GetMaxShownLength^⚠
p7_tophits_Grow^⚠
p7_tophits_Merge^⚠
p7_tophits_RemoveDuplicates^⚠
p7_tophits_SortByModelnameAndAlipos^⚠
p7_tophits_SortBySeqidxAndAlipos^⚠
p7_tophits_SortBySortkey^⚠
p7_tophits_TabularDomains^⚠
p7_tophits_TabularTail^⚠
p7_tophits_TabularTargets^⚠
p7_tophits_TabularXfam^⚠
p7_tophits_Targets^⚠
p7_tophits_Threshold^⚠
p7_trace_Append^⚠
p7_trace_AppendWithPP^⚠
p7_trace_Compare^⚠
p7_trace_Count^⚠
p7_trace_Create^⚠
p7_trace_CreateWithPP^⚠
p7_trace_Destroy^⚠
p7_trace_DestroyArray^⚠
p7_trace_Doctor^⚠
p7_trace_Dump^⚠
p7_trace_FauxFromMSA^⚠
p7_trace_GetDomainCoords^⚠
p7_trace_GetDomainCount^⚠
p7_trace_GetExpectedAccuracy^⚠
p7_trace_GetStateUseCounts^⚠
p7_trace_Grow^⚠
p7_trace_GrowIndex^⚠
p7_trace_GrowIndexTo^⚠
p7_trace_GrowTo^⚠
p7_trace_Index^⚠
p7_trace_Reuse^⚠
p7_trace_Reverse^⚠
p7_trace_Score^⚠
p7_trace_SetPP^⚠
p7_trace_Validate^⚠
p7_tracealign_MSA^⚠
p7_tracealign_Seqs^⚠
p7_tracealign_computeTraces^⚠
p7_tracealign_getMSAandStats^⚠
p7_translated_alidisplay_Print^⚠

Type Aliases§

Unions§

ESL_SQDATA
p7_scoredata_s__bindgen_ty_1
pthread_mutex_t