List of all items

Structs

• ClassificationResults
• classify::classify_sequence::ReadCounts
• classify::classify_stats::NodeStats
• krakendb::KrakenDB
• krakendb::KrakenDBIndex
• taxdb::TaxonomyData
• types::DNASequence
• types::KrakenOutputLine
• types::KrakenReportRow

Functions

• classify::classify_reads::classify_reads_parallel
• classify::classify_sequence::classify_sequence
• classify::classify_sequence::lca
• classify::classify_sequence::resolve_tree_kraken
• classify::classify_stats::accumulate_clade_stats
• classify::classify_stats::build_children_map
• classify::classify_stats::build_kraken_report
• classify::classify_stats::generate_kraken_style_report
• classify::classify_stats::init_node_stats
• classify_reads
• fastq::read_fastq_records
• taxdb::read_taxdb_and_counts

Type Aliases

• classify::classify_sequence::ParentMap
• classify::classify_sequence::TaxonCounts
• taxdb::NameMap
• taxdb::ParentMap
• taxdb::RankMap

Constants

• krakendb::DATABASE_FILE_TYPE
• krakendb::INDEX2_XOR_MASK
• krakendb::KRAKEN_INDEX2_STRING
• krakendb::KRAKEN_INDEX_STRING