List of all items
Structs
- HitGroup
- IndexOptions
- KBuildHasher
- KHasher
- SBuildHasher
- args::Build
- args::ClassifyArgs
- args::KLMTArgs
- compact_hash::CHTable
- compact_hash::HashConfig
- compact_hash::Page
- compact_hash::Row
- compact_hash::Slot
- readcounts::ReadCounts
- readcounts::UnionError
- taxonomy::NCBITaxonomy
- taxonomy::Taxonomy
- taxonomy::TaxonomyNode
Traits
Functions
- args::parse_size
- classify::process_hitgroup
- classify::resolve_tree
- compact_hash::read_next_page
- construct_seed_template
- db::convert_fna_to_k2_format
- db::generate_taxonomy
- db::get_bits_for_taxid
- db::process_k2file
- fmix64
- murmur_hash3
- parse_binary
- report::get_clade_counters
- report::get_clade_counts
- report::kraken_report_dfs
- report::print_kraken_style_report_line
- report::report_kraken_style
- report::report_mpa_style
- sea_hash
- taxonomy::parse_names_file
- taxonomy::parse_nodes_file
- u64_to_option
- utils::create_partition_files
- utils::create_partition_writers
- utils::create_sample_file
- utils::expand_spaced_seed_mask
- utils::find_and_sort_files
- utils::find_and_trans_bin_files
- utils::find_and_trans_files
- utils::find_files
- utils::format_bytes
- utils::get_file_limit
- utils::get_lastest_file_index
- utils::open_file
- utils::read_id_to_taxon_map
- utils::set_fd_limit
Type Aliases
- readcounts::ReadCounter
- readcounts::TaxonCounters
- readcounts::TaxonCountersDash
- readcounts::TaxonCounts