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extern crate kodama; extern crate libc; use std::slice; use kodama::{Method, linkage}; use libc::{c_double, c_float, size_t}; #[macro_use] mod macros; #[repr(C)] #[derive(Clone, Copy, Debug)] pub enum kodama_method { Single, Complete, Average, Weighted, Ward, Centroid, Median, } #[repr(C)] #[derive(Debug)] pub struct kodama_dendrogram { steps: Vec<kodama_step>, observations: size_t, } #[repr(C)] #[derive(Debug)] pub struct kodama_step { pub cluster1: size_t, pub cluster2: size_t, pub dissimilarity: c_double, pub size: size_t, } impl kodama_method { fn into_method(self) -> Method { match self { kodama_method::Single => Method::Single, kodama_method::Complete => Method::Complete, kodama_method::Average => Method::Average, kodama_method::Weighted => Method::Weighted, kodama_method::Ward => Method::Ward, kodama_method::Centroid => Method::Centroid, kodama_method::Median => Method::Median, } } } ffi_fn! { fn kodama_linkage_double( dis: *mut c_double, observations: size_t, method: kodama_method, ) -> *mut kodama_dendrogram { assert!(!dis.is_null()); let dis_len = (observations * (observations - 1)) / 2; let dis = unsafe { slice::from_raw_parts_mut(dis, dis_len) }; let dend = linkage(dis, observations, method.into_method()); let mut c_steps = vec![]; for step in dend.steps() { c_steps.push(kodama_step { cluster1: step.cluster1, cluster2: step.cluster2, dissimilarity: step.dissimilarity, size: step.size, }); } Box::into_raw(Box::new(kodama_dendrogram { steps: c_steps, observations: observations, })) } } ffi_fn! { fn kodama_linkage_float( dis: *mut c_float, observations: size_t, method: kodama_method, ) -> *mut kodama_dendrogram { assert!(!dis.is_null()); let dis_len = (observations * (observations - 1)) / 2; let dis = unsafe { slice::from_raw_parts_mut(dis, dis_len) }; let dend = linkage(dis, observations, method.into_method()); let mut c_steps = vec![]; for step in dend.steps() { c_steps.push(kodama_step { cluster1: step.cluster1, cluster2: step.cluster2, dissimilarity: step.dissimilarity as c_double, size: step.size, }); } Box::into_raw(Box::new(kodama_dendrogram { steps: c_steps, observations: observations, })) } } ffi_fn! { fn kodama_dendrogram_free( dend: *mut kodama_dendrogram, ) { unsafe { Box::from_raw(dend); } } } ffi_fn! { fn kodama_dendrogram_len( dend: *const kodama_dendrogram, ) -> size_t { let dend = unsafe { &*dend }; dend.steps.len() } } ffi_fn! { fn kodama_dendrogram_observations( dend: *const kodama_dendrogram, ) -> size_t { let dend = unsafe { &*dend }; dend.observations } } ffi_fn! { fn kodama_dendrogram_steps( dend: *const kodama_dendrogram, ) -> *const kodama_step { let dend = unsafe { &*dend }; dend.steps.as_ptr() } }