List of all items
Structs
- breakpoint::BreakpointArgs
- build::BuildArgs
- classify::ClassifyArgs
- cluster_pairs::ClusterPairsArgs
- cluster_pairs::Hit
- cluster_pairs::ReadMaps
- extract::ExtractArgs
- extract_bam::ExtractBamArgs
- pipeline::PipelineArgs
- regions::RegionsArgs
- tools::depth::BasicReadFilter
- tools::depth::BedRecord
- tools::depth::WindowProcessor
- tools::info::InfoArgs
- tools::sort_bam::SortBamArgs
- utils::ClassifyResults
- utils::SingletonKmers
Functions
- breakpoint::breakpoint
- build::build
- classify::classify
- cluster_pairs::build_pair_to_reads
- cluster_pairs::build_read_maps
- cluster_pairs::cluster_overlaps
- cluster_pairs::cluster_pairs
- cluster_pairs::orient_and_collect
- extract::extract
- extract_bam::extract_bam
- pipeline::pipeline
- regions::regions
- tools::depth::get_runner
- tools::graph_matching::greedy_max_weight_matching
- tools::info::info
- tools::info::load_kmer_db
- tools::info::map_kmer_to_file
- tools::sort_bam::sort_bam
- utils::index_bam
- utils::need_update
- utils::prefix
- utils::prefix_until_dot
- utils::sh