Crate htsget_search

Expand description

Module providing a representation of the HtsGet specification.

Modules§

bam_search: Module providing the search capability using BAM/BAI files
bcf_search: Module providing the search capability using BCF files
cram_search: This module provides search capabilities for CRAM files.
from_storage: Module providing an implementation of the HtsGet trait using a [StorageTrait].
search: The following file defines commonalities between all the file formats. While each format has its own particularities, there are many shared components that can be abstracted.
vcf_search: Module providing the search capability using VCF files

Config: Simplified config.
FileStorage: Implementation for the StorageTrait trait using the local file system. [T] is the type of the server struct, which is used for formatting urls.
Headers: The headers that need to be supplied when requesting data from a url.
JsonResponse: Wrapped json response for htsget.
Query: A query contains all the parameters that can be used when requesting a search for either of reads or variants.
Response: The response for a HtsGet query.
Storage: The top-level storage type is created from any StorageTrait.
Url: A url from which raw data can be retrieved.

HtsGet: Trait representing a search for either reads or variants in the HtsGet specification.
IdResolver: A trait which matches the query id, replacing the match in the substitution text.
ResolveResponse: A trait for determining the response from Storage.
StorageResolver: A trait which uses storage to resolve requests into responses.