Crate hts_sys[−][src]

Expand description

This module exposes the raw HTSlib bindings.

Structs

__BindgenBitfieldUnit

__locale_struct

__pthread_internal_list

_bcf_sr_regions_t

cram_block_compression_hdr

cram_block_slice_hdr

htsFormat__bindgen_ty_1

hts_itr_t__bindgen_ty_1

hts_md5_context

hts_pair64_max_t

hts_tpool_process

hts_tpool_result

pthread_cond_t__bindgen_ty_1

pthread_mutex_t___pthread_mutex_s

pthread_rwlock_t__bindgen_ty_1

wait__bindgen_ty_1

wait__bindgen_ty_2

Constants

AIO_PRIO_DELTA_MAX

BAM_CIGAR_SHIFT

BAM_FPROPER_PAIR

BAM_FSUPPLEMENTARY

BAM_USER_OWNS_DATA

BAM_USER_OWNS_STRUCT

BCF_ERR_CTG_INVALID

BCF_ERR_CTG_UNDEF

BCF_ERR_TAG_INVALID

BCF_ERR_TAG_UNDEF

BCF_MAX_BT_INT8

BCF_MAX_BT_INT16

BCF_MAX_BT_INT32

BCF_MIN_BT_INT8

BCF_MIN_BT_INT16

BCF_MIN_BT_INT32

BCF_SR_PAIR_ANY

BCF_SR_PAIR_BOTH

BCF_SR_PAIR_BOTH_REF

BCF_SR_PAIR_EXACT

BCF_SR_PAIR_INDELS

BCF_SR_PAIR_INDEL_REF

BCF_SR_PAIR_SNPS

BCF_SR_PAIR_SNP_REF

BCF_SR_PAIR_SOME

BGZF_BLOCK_SIZE

BGZF_ERR_HEADER

BGZF_ERR_MISUSE

BGZF_MAX_BLOCK_SIZE

CHARCLASS_NAME_MAX

COLLAPSE_INDELS

COLL_WEIGHTS_MAX

ENOTRECOVERABLE

EPROTONOSUPPORT

ESOCKTNOSUPPORT

HAVE___BUILTIN_CLZ

HTS_ALLOW_UNALIGNED

HTS_IDX_SAVE_REMOTE

HTS_IDX_SILENT_FAIL

HTS_PARSE_ONE_COORD

HTS_PARSE_THOUSANDS_SEP

HTS_PATH_SEPARATOR_CHAR

HTS_PATH_SEPARATOR_STR

HTS_RESIZE_CLEAR

INT_LEAST16_MAX

INT_LEAST16_MIN

INT_LEAST32_MAX

INT_LEAST32_MIN

PTHREAD_DESTRUCTOR_ITERATIONS

PTHREAD_KEYS_MAX

PTHREAD_STACK_MIN

SAM_FORMAT_VERSION

UINT_FAST16_MAX

UINT_FAST32_MAX

UINT_LEAST8_MAX

UINT_LEAST16_MAX

UINT_LEAST32_MAX

_BITS_BYTESWAP_H

_BITS_POSIX1_LIM_H

_BITS_POSIX2_LIM_H

_BITS_PTHREADTYPES_H

_BITS_TYPESIZES_H

_G_HAVE_IO_FILE_OPEN

_G_HAVE_IO_GETLINE_INFO

_G_HAVE_LONG_DOUBLE_IO

_G_HAVE_PRINTF_FP

_G_HAVE_SYS_CDEFS

_G_HAVE_SYS_WAIT

_G_IO_IO_FILE_VERSION

_G_NAMES_HAVE_UNDERSCORE

_G_NEED_STDARG_H

_G_USING_THUNKS

_G_VTABLE_LABEL_HAS_LENGTH

_G_VTABLE_LABEL_PREFIX

_IO_CURRENTLY_PUTTING

_IO_DELETE_DONT_CLOSE

_IO_FLAGS2_MMAP

_IO_FLAGS2_NOTCANCEL

_IO_FLAGS2_USER_WBUF

_IO_HAVE_SYS_WAIT

_IO_IS_APPENDING

_IO_TIED_PUT_GET

_IO_UNIFIED_JUMPTABLES

_LIBC_LIMITS_H_

_OLD_STDIO_MAGIC

_POSIX2_BC_BASE_MAX

_POSIX2_BC_DIM_MAX

_POSIX2_BC_SCALE_MAX

_POSIX2_BC_STRING_MAX

_POSIX2_CHARCLASS_NAME_MAX

_POSIX2_COLL_WEIGHTS_MAX

_POSIX2_EXPR_NEST_MAX

_POSIX2_LINE_MAX

_POSIX2_RE_DUP_MAX

_POSIX_AIO_LISTIO_MAX

_POSIX_CHILD_MAX

_POSIX_CLOCKRES_MIN

_POSIX_C_SOURCE

_POSIX_DELAYTIMER_MAX

_POSIX_HOST_NAME_MAX

_POSIX_LINK_MAX

_POSIX_LOGIN_NAME_MAX

_POSIX_MAX_CANON

_POSIX_MAX_INPUT

_POSIX_MQ_OPEN_MAX

_POSIX_MQ_PRIO_MAX

_POSIX_NAME_MAX

_POSIX_NGROUPS_MAX

_POSIX_OPEN_MAX

_POSIX_PATH_MAX

_POSIX_PIPE_BUF

_POSIX_RE_DUP_MAX

_POSIX_RTSIG_MAX

_POSIX_SEM_NSEMS_MAX

_POSIX_SEM_VALUE_MAX

_POSIX_SIGQUEUE_MAX

_POSIX_SSIZE_MAX

_POSIX_STREAM_MAX

_POSIX_SYMLINK_MAX

_POSIX_SYMLOOP_MAX

_POSIX_THREAD_DESTRUCTOR_ITERATIONS

_POSIX_THREAD_KEYS_MAX

_POSIX_THREAD_THREADS_MAX

_POSIX_TIMER_MAX

_POSIX_TTY_NAME_MAX

_POSIX_TZNAME_MAX

_SIGSET_H_types

_STRUCT_TIMEVAL

_SYS_SYSMACROS_H

__BIT_TYPES_DEFINED__

__FLOAT_WORD_ORDER

__GLIBC_HAVE_LONG_LONG

__GLIBC_MINOR__

__GNU_LIBRARY__

__LITTLE_ENDIAN

__PRIPTR_PREFIX

__PTHREAD_MUTEX_HAVE_PREV

__SIZEOF_PTHREAD_ATTR_T

__SIZEOF_PTHREAD_BARRIERATTR_T

__SIZEOF_PTHREAD_BARRIER_T

__SIZEOF_PTHREAD_CONDATTR_T

__SIZEOF_PTHREAD_COND_T

__SIZEOF_PTHREAD_MUTEXATTR_T

__SIZEOF_PTHREAD_MUTEX_T

__SIZEOF_PTHREAD_RWLOCKATTR_T

__SIZEOF_PTHREAD_RWLOCK_T

__STDC_IEC_559_COMPLEX__

__STDC_IEC_559__

__STDC_ISO_10646__

__USE_FORTIFY_LEVEL

__USE_POSIX199309

__USE_POSIX199506

__USE_POSIX_IMPLICITLY

__WORDSIZE_COMPAT32

____FILE_defined

____gwchar_t_defined

__clock_t_defined

__clockid_t_defined

__codecvt_result___codecvt_error

__codecvt_result___codecvt_noconv

__codecvt_result___codecvt_ok

__codecvt_result___codecvt_partial

__ldiv_t_defined

__lldiv_t_defined

__mbstate_t_defined

__time_t_defined

__timer_t_defined

__timespec_defined

bcf_int8_missing

bcf_int8_vector_end

bcf_int16_missing

bcf_int16_vector_end

bcf_int32_missing

bcf_int32_vector_end

bcf_int64_missing

bcf_int64_vector_end

bcf_sr_error_api_usage_error

bcf_sr_error_bcf_read_error

bcf_sr_error_file_type_error

bcf_sr_error_header_error

bcf_sr_error_idx_load_failed

bcf_sr_error_no_eof

bcf_sr_error_no_memory

bcf_sr_error_not_bgzf

bcf_sr_error_open_failed

bcf_sr_error_vcf_parse_error

bcf_sr_opt_t_BCF_SR_PAIR_LOGIC

bcf_sr_opt_t_BCF_SR_REQUIRE_IDX

bcf_str_missing

bcf_str_vector_end

cram_block_method_BM_ERROR

cram_block_method_BZIP2

cram_block_method_GZIP

cram_block_method_GZIP_RLE

cram_block_method_LZMA

cram_block_method_RANS

cram_block_method_RANS0

cram_block_method_RANS1

cram_block_method_RAW

cram_content_type_COMPRESSION_HEADER

cram_content_type_CORE

cram_content_type_CT_ERROR

cram_content_type_EXTERNAL

cram_content_type_FILE_HEADER

cram_content_type_MAPPED_SLICE

cram_content_type_UNMAPPED_SLICE

fai_format_options_FAI_FASTA

fai_format_options_FAI_FASTQ

fai_format_options_FAI_NONE

fai_load_options_FAI_CREATE

htsCompression_bgzf

htsCompression_bzip2_compression

htsCompression_compression_maximum

htsCompression_custom

htsCompression_gzip

htsCompression_no_compression

htsExactFormat_bai

htsExactFormat_bam

htsExactFormat_bcf

htsExactFormat_bed

htsExactFormat_binary_format

htsExactFormat_crai

htsExactFormat_cram

htsExactFormat_csi

htsExactFormat_empty_format

htsExactFormat_fai_format

htsExactFormat_fasta_format

htsExactFormat_fastq_format

htsExactFormat_format_maximum

htsExactFormat_fqi_format

htsExactFormat_gzi

htsExactFormat_htsget

htsExactFormat_json

htsExactFormat_sam

htsExactFormat_tbi

htsExactFormat_text_format

htsExactFormat_unknown_format

htsExactFormat_vcf

htsFormatCategory_category_maximum

htsFormatCategory_index_file

htsFormatCategory_region_list

htsFormatCategory_sequence_data

htsFormatCategory_unknown_category

htsFormatCategory_variant_data

htsLogLevel_HTS_LOG_DEBUG

htsLogLevel_HTS_LOG_ERROR

htsLogLevel_HTS_LOG_INFO

htsLogLevel_HTS_LOG_OFF

htsLogLevel_HTS_LOG_TRACE

htsLogLevel_HTS_LOG_WARNING

hts_fmt_option_CRAM_OPT_BASES_PER_SLICE

hts_fmt_option_CRAM_OPT_DECODE_MD

hts_fmt_option_CRAM_OPT_EMBED_REF

hts_fmt_option_CRAM_OPT_IGNORE_MD5

hts_fmt_option_CRAM_OPT_LOSSY_NAMES

hts_fmt_option_CRAM_OPT_MULTI_SEQ_PER_SLICE

hts_fmt_option_CRAM_OPT_NO_REF

hts_fmt_option_CRAM_OPT_NTHREADS

hts_fmt_option_CRAM_OPT_PREFIX

hts_fmt_option_CRAM_OPT_RANGE

hts_fmt_option_CRAM_OPT_REFERENCE

hts_fmt_option_CRAM_OPT_REQUIRED_FIELDS

hts_fmt_option_CRAM_OPT_SEQS_PER_SLICE

hts_fmt_option_CRAM_OPT_SHARED_REF

hts_fmt_option_CRAM_OPT_SLICES_PER_CONTAINER

hts_fmt_option_CRAM_OPT_STORE_MD

hts_fmt_option_CRAM_OPT_STORE_NM

hts_fmt_option_CRAM_OPT_THREAD_POOL

hts_fmt_option_CRAM_OPT_USE_BZIP2

hts_fmt_option_CRAM_OPT_USE_LZMA

hts_fmt_option_CRAM_OPT_USE_RANS

hts_fmt_option_CRAM_OPT_VERBOSITY

hts_fmt_option_CRAM_OPT_VERSION

hts_fmt_option_HTS_OPT_BLOCK_SIZE

hts_fmt_option_HTS_OPT_CACHE_SIZE

hts_fmt_option_HTS_OPT_COMPRESSION_LEVEL

hts_fmt_option_HTS_OPT_NTHREADS

hts_fmt_option_HTS_OPT_THREAD_POOL

sam_fields_SAM_AUX

sam_fields_SAM_CIGAR

sam_fields_SAM_FLAG

sam_fields_SAM_MAPQ

sam_fields_SAM_PNEXT

sam_fields_SAM_POS

sam_fields_SAM_QNAME

sam_fields_SAM_QUAL

sam_fields_SAM_RGAUX

sam_fields_SAM_RNAME

sam_fields_SAM_RNEXT

sam_fields_SAM_SEQ

sam_fields_SAM_TLEN

Statics

Functions

_IO_ferror ^⚠

_IO_flockfile ^⚠

_IO_free_backup_area ^⚠

_IO_ftrylockfile ^⚠

_IO_funlockfile ^⚠

_IO_peekc_locked ^⚠

_IO_seekoff ^⚠

_IO_seekpos ^⚠

_IO_vfprintf ^⚠

_IO_vfscanf ^⚠

__assert_fail ^⚠

__assert_perror_fail ^⚠

__ctype_get_mb_cur_max ^⚠

__errno_location ^⚠

__getdelim ^⚠

__overflow ^⚠

__secure_getenv ^⚠

__strtok_r ^⚠

__underflow ^⚠

bam_auxB2f ^⚠

bam_auxB2i ^⚠

bam_auxB_len ^⚠

bam_aux_append ^⚠

bam_aux_del ^⚠

bam_aux_get ^⚠

bam_aux_update_array ^⚠

bam_aux_update_float ^⚠

bam_aux_update_int ^⚠

bam_aux_update_str ^⚠

bam_cigar2qlen ^⚠

bam_cigar2rlen ^⚠

bam_destroy1 ^⚠

bam_endpos ^⚠

bam_flag2str ^⚠

bam_hdr_read ^⚠

bam_hdr_write ^⚠

bam_mplp64_auto ^⚠

bam_mplp_auto ^⚠

bam_mplp_constructor ^⚠

bam_mplp_destroy ^⚠

bam_mplp_destructor ^⚠

bam_mplp_init ^⚠

bam_mplp_init_overlaps ^⚠

bam_mplp_reset ^⚠

bam_mplp_set_maxcnt ^⚠

bam_plp64_auto ^⚠

bam_plp64_next ^⚠

bam_plp_auto ^⚠

bam_plp_constructor ^⚠

bam_plp_destroy ^⚠

bam_plp_destructor ^⚠

bam_plp_init ^⚠

bam_plp_insertion ^⚠

bam_plp_next ^⚠

bam_plp_push ^⚠

bam_plp_reset ^⚠

bam_plp_set_maxcnt ^⚠

bam_set_qname ^⚠

bam_str2flag ^⚠

bam_write1 ^⚠

bcf_add_filter ^⚠

bcf_add_id ^⚠

bcf_calc_ac ^⚠

bcf_destroy ^⚠

bcf_enc_vchar ^⚠

bcf_enc_vfloat ^⚠

bcf_enc_vint ^⚠

bcf_fmt_array ^⚠

bcf_fmt_sized_array ^⚠

bcf_get_fmt ^⚠

bcf_get_fmt_id ^⚠

bcf_get_format_string ^⚠

bcf_get_format_values ^⚠

bcf_get_info ^⚠

bcf_get_info_id ^⚠

bcf_get_info_values ^⚠

bcf_get_variant_type ^⚠

bcf_get_variant_types ^⚠

bcf_gt_type ^⚠

bcf_has_filter ^⚠

bcf_hdr_add_hrec ^⚠

bcf_hdr_add_sample ^⚠

bcf_hdr_append ^⚠

bcf_hdr_combine ^⚠

bcf_hdr_destroy ^⚠

bcf_hdr_dup ^⚠

bcf_hdr_fmt_text ^⚠

bcf_hdr_format ^⚠

bcf_hdr_get_hrec ^⚠

bcf_hdr_get_version ^⚠

bcf_hdr_id2int ^⚠

bcf_hdr_init ^⚠

bcf_hdr_merge ^⚠

bcf_hdr_parse ^⚠

bcf_hdr_parse_line ^⚠

bcf_hdr_printf ^⚠

bcf_hdr_read ^⚠

bcf_hdr_remove ^⚠

bcf_hdr_seqnames ^⚠

bcf_hdr_set ^⚠

bcf_hdr_set_samples ^⚠

bcf_hdr_set_version ^⚠

bcf_hdr_subset ^⚠

bcf_hdr_sync ^⚠

bcf_hdr_write ^⚠

bcf_hrec_add_key ^⚠

bcf_hrec_destroy ^⚠

bcf_hrec_dup ^⚠

bcf_hrec_find_key ^⚠

bcf_hrec_format ^⚠

bcf_hrec_set_val ^⚠

bcf_idx_init ^⚠

bcf_idx_save ^⚠

bcf_index_build ^⚠

bcf_index_build2 ^⚠

bcf_index_build3 ^⚠

bcf_index_load2 ^⚠

bcf_index_load3 ^⚠

bcf_is_snp ^⚠

bcf_readrec ^⚠

bcf_remove_allele_set ^⚠

bcf_remove_alleles ^⚠

bcf_remove_filter ^⚠

bcf_sr_add_reader ^⚠

bcf_sr_destroy ^⚠

bcf_sr_destroy_threads ^⚠

bcf_sr_init ^⚠

bcf_sr_next_line ^⚠

bcf_sr_regions_destroy ^⚠

bcf_sr_regions_flush ^⚠

bcf_sr_regions_init ^⚠

bcf_sr_regions_next ^⚠

bcf_sr_regions_overlap ^⚠

bcf_sr_regions_seek ^⚠

bcf_sr_remove_reader ^⚠

bcf_sr_seek ^⚠

bcf_sr_set_opt ^⚠

bcf_sr_set_regions ^⚠

bcf_sr_set_samples ^⚠

bcf_sr_set_targets ^⚠

bcf_sr_set_threads ^⚠

bcf_sr_strerror ^⚠

bcf_subset ^⚠

bcf_subset_format ^⚠

bcf_translate ^⚠

bcf_trim_alleles ^⚠

bcf_unpack ^⚠

bcf_update_alleles ^⚠

bcf_update_alleles_str ^⚠

bcf_update_filter ^⚠

bcf_update_format ^⚠

bcf_update_format_string ^⚠

bcf_update_id ^⚠

bcf_update_info ^⚠

bgzf_block_write ^⚠

bgzf_check_EOF ^⚠

bgzf_close ^⚠

bgzf_compress ^⚠

bgzf_compression ^⚠

bgzf_dopen ^⚠

bgzf_flush ^⚠

bgzf_flush_try ^⚠

bgzf_getline ^⚠

bgzf_hopen ^⚠

bgzf_index_build_init ^⚠

bgzf_index_dump ^⚠

bgzf_index_dump_hfile ^⚠

bgzf_index_load ^⚠

bgzf_index_load_hfile ^⚠

bgzf_is_bgzf ^⚠

bgzf_raw_read ^⚠

bgzf_raw_write ^⚠

bgzf_read_block ^⚠

bgzf_set_cache_size ^⚠

bgzf_thread_pool ^⚠

bgzf_useek ^⚠

bgzf_utell ^⚠

bgzf_write ^⚠

clearerr_unlocked ^⚠

cram_block_append ^⚠

cram_block_get_comp_size ^⚠

cram_block_get_content_id ^⚠

cram_block_get_content_type ^⚠

cram_block_get_crc32 ^⚠

cram_block_get_data ^⚠

cram_block_get_offset ^⚠

cram_block_get_uncomp_size ^⚠

cram_block_set_comp_size ^⚠

cram_block_set_content_id ^⚠

cram_block_set_crc32 ^⚠

cram_block_set_data ^⚠

cram_block_set_offset ^⚠

cram_block_set_uncomp_size ^⚠

cram_block_size ^⚠

cram_block_update_size ^⚠

cram_check_EOF ^⚠

cram_close ^⚠

cram_compress_block ^⚠

cram_container_get_landmarks ^⚠

cram_container_get_length ^⚠

cram_container_get_num_blocks ^⚠

cram_container_is_empty ^⚠

cram_container_set_landmarks ^⚠

cram_container_set_length ^⚠

cram_container_set_num_blocks ^⚠

cram_container_size ^⚠

cram_copy_slice ^⚠

cram_dopen ^⚠

cram_fd_get_fp ^⚠

cram_fd_get_header ^⚠

cram_fd_get_version ^⚠

cram_fd_set_fp ^⚠

cram_fd_set_header ^⚠

cram_fd_set_version ^⚠

cram_flush ^⚠

cram_free_block ^⚠

cram_free_container ^⚠

cram_get_refs ^⚠

cram_major_vers ^⚠

cram_minor_vers ^⚠

cram_new_block ^⚠

cram_new_container ^⚠

cram_read_block ^⚠

cram_read_container ^⚠

cram_set_header ^⚠

cram_set_option ^⚠

cram_set_voption ^⚠

cram_store_container ^⚠

cram_transcode_rg ^⚠

cram_uncompress_block ^⚠

cram_write_block ^⚠

cram_write_container ^⚠

errmod_cal ^⚠

errmod_destroy ^⚠

errmod_init ^⚠

fai_build3 ^⚠

fai_destroy ^⚠

fai_fetch64 ^⚠

fai_fetchqual ^⚠

fai_fetchqual64 ^⚠

fai_load3_format ^⚠

fai_load_format ^⚠

fai_parse_region ^⚠

fai_set_cache_size ^⚠

faidx_fetch_nseq ^⚠

faidx_fetch_qual ^⚠

faidx_fetch_qual64 ^⚠

faidx_fetch_seq ^⚠

faidx_fetch_seq64 ^⚠

faidx_has_seq ^⚠

faidx_iseq ^⚠

faidx_nseq ^⚠

faidx_seq_len ^⚠

feof_unlocked ^⚠

ferror_unlocked ^⚠

fflush_unlocked ^⚠

fgetc_unlocked ^⚠

fileno_unlocked ^⚠

fputc_unlocked ^⚠

fread_unlocked ^⚠

ftrylockfile ^⚠

funlockfile ^⚠

fwrite_unlocked ^⚠

getc_unlocked ^⚠

getchar_unlocked ^⚠

getloadavg ^⚠

gnu_dev_major ^⚠

gnu_dev_makedev ^⚠

gnu_dev_minor ^⚠

hrec_add_idx ^⚠

hts_check_EOF ^⚠

hts_detect_format ^⚠

hts_file_type ^⚠

hts_format_description ^⚠

hts_format_file_extension ^⚠

hts_get_bgzfp ^⚠

hts_get_format ^⚠

hts_get_log_level ^⚠

hts_getline ^⚠

hts_idx_destroy ^⚠

hts_idx_finish ^⚠

hts_idx_fmt ^⚠

hts_idx_get_meta ^⚠

hts_idx_get_n_no_coor ^⚠

hts_idx_get_stat ^⚠

hts_idx_init ^⚠

hts_idx_load ^⚠

hts_idx_load2 ^⚠

hts_idx_load3 ^⚠

hts_idx_push ^⚠

hts_idx_save ^⚠

hts_idx_save_as ^⚠

hts_idx_seqnames ^⚠

hts_idx_set_meta ^⚠

hts_idx_tbi_name ^⚠

hts_itr_destroy ^⚠

hts_itr_multi_bam ^⚠

hts_itr_multi_cram ^⚠

hts_itr_multi_next ^⚠

hts_itr_next ^⚠

hts_itr_query ^⚠

hts_itr_querys ^⚠

hts_itr_regions ^⚠

hts_md5_destroy ^⚠

hts_md5_final ^⚠

hts_md5_hex ^⚠

hts_md5_init ^⚠

hts_md5_reset ^⚠

hts_md5_update ^⚠

hts_open_format ^⚠

hts_opt_add ^⚠

hts_opt_apply ^⚠

hts_opt_free ^⚠

hts_parse_decimal ^⚠

hts_parse_format ^⚠

hts_parse_opt_list ^⚠

hts_parse_reg ^⚠

hts_parse_reg64 ^⚠

hts_parse_region ^⚠

hts_readlines ^⚠

hts_readlist ^⚠

hts_reglist_create ^⚠

hts_reglist_free ^⚠

hts_resize_array_^⚠

hts_set_cache_size ^⚠

hts_set_fai_filename ^⚠

hts_set_log_level ^⚠

hts_set_opt ^⚠

hts_set_thread_pool ^⚠

hts_set_threads ^⚠

hts_tpool_delete_result ^⚠

hts_tpool_destroy ^⚠

hts_tpool_dispatch ^⚠

hts_tpool_dispatch2 ^⚠

hts_tpool_dispatch3 ^⚠

hts_tpool_init ^⚠

hts_tpool_kill ^⚠

hts_tpool_next_result ^⚠

hts_tpool_next_result_wait ^⚠

hts_tpool_process_attach ^⚠

hts_tpool_process_destroy ^⚠

hts_tpool_process_detach ^⚠

hts_tpool_process_empty ^⚠

hts_tpool_process_flush ^⚠

hts_tpool_process_init ^⚠

hts_tpool_process_len ^⚠

hts_tpool_process_qsize ^⚠

hts_tpool_process_ref_decr ^⚠

hts_tpool_process_ref_incr ^⚠

hts_tpool_process_reset ^⚠

hts_tpool_process_shutdown ^⚠

hts_tpool_process_sz ^⚠

hts_tpool_result_data ^⚠

hts_tpool_size ^⚠

hts_tpool_wake_dispatch ^⚠

hts_version ^⚠

initstate_r ^⚠

int32_put_blk ^⚠

kbs_destroy ^⚠

kbs_insert ^⚠

ksplit_core ^⚠

open_memstream ^⚠

posix_memalign ^⚠

probaln_glocal ^⚠

putc_unlocked ^⚠

putchar_unlocked ^⚠

sam_cap_mapq ^⚠

sam_format1 ^⚠

sam_hdr_add_line ^⚠

sam_hdr_add_lines ^⚠

sam_hdr_add_pg ^⚠

sam_hdr_change_HD ^⚠

sam_hdr_count_lines ^⚠

sam_hdr_destroy ^⚠

sam_hdr_dup ^⚠

sam_hdr_find_line_id ^⚠

sam_hdr_find_line_pos ^⚠

sam_hdr_find_tag_id ^⚠

sam_hdr_find_tag_pos ^⚠

sam_hdr_incr_ref ^⚠

sam_hdr_init ^⚠

sam_hdr_length ^⚠

sam_hdr_line_index ^⚠

sam_hdr_line_name ^⚠

sam_hdr_name2tid ^⚠

sam_hdr_nref ^⚠

sam_hdr_parse ^⚠

sam_hdr_pg_id ^⚠

sam_hdr_read ^⚠

sam_hdr_remove_except ^⚠

sam_hdr_remove_line_id ^⚠

sam_hdr_remove_line_pos ^⚠

sam_hdr_remove_lines ^⚠

sam_hdr_remove_tag_id ^⚠

sam_hdr_str ^⚠

sam_hdr_tid2len ^⚠

sam_hdr_tid2name ^⚠

sam_hdr_update_line ^⚠

sam_hdr_write ^⚠

sam_idx_init ^⚠

sam_idx_save ^⚠

sam_index_build ^⚠

sam_index_build2 ^⚠

sam_index_build3 ^⚠

sam_index_load ^⚠

sam_index_load2 ^⚠

sam_index_load3 ^⚠

sam_itr_queryi ^⚠

sam_itr_querys ^⚠

sam_itr_regarray ^⚠

sam_itr_regions ^⚠

sam_open_mode ^⚠

sam_open_mode_opts ^⚠

sam_parse1 ^⚠

sam_parse_region ^⚠

sam_prob_realn ^⚠

sam_write1 ^⚠

setlinebuf ^⚠

setstate_r ^⚠

strcasecmp ^⚠

strerror_l ^⚠

strerror_r ^⚠

stringify_argv ^⚠

strncasecmp ^⚠

tbx_destroy ^⚠

tbx_index_build ^⚠

tbx_index_build2 ^⚠

tbx_index_build3 ^⚠

tbx_index_load ^⚠

tbx_index_load2 ^⚠

tbx_index_load3 ^⚠

tbx_name2id ^⚠

tbx_readrec ^⚠

tbx_seqnames ^⚠

vcf_format ^⚠

vcf_hdr_read ^⚠

vcf_hdr_write ^⚠

vcf_write_line ^⚠

Type Definitions

__builtin_va_list

__codecvt_result

__pthread_list_t

bcf_sr_regions_t

cram_block_method

cram_content_type

fai_format_options

fai_load_options

htsFormatCategory

hts_itr_multi_query_func

hts_itr_multi_t

hts_itr_query_func

hts_readrec_func

pthread_spinlock_t

Unions

__mbstate_t__bindgen_ty_1

bcf_info_t__bindgen_ty_1

htsFile__bindgen_ty_1

hts_opt__bindgen_ty_1

pthread_barrier_t

pthread_barrierattr_t

pthread_condattr_t

pthread_mutex_t

pthread_mutexattr_t

pthread_rwlock_t

pthread_rwlockattr_t