Module hgvs::parser

This module contains the code for HGVS variant descriptions.

The parsing functionality is provided through Type::parse() functions. The data structures also provide the Display trait for conversion to strings etc.

Structs

• Accession
  Representation of accession, e.g., NM_01234.5.
• CdsInterval
  CDS position interval.
• CdsLocEdit
  Coding sequence location with edit.
• CdsPos
  CDS position.
• GeneSymbol
  Representation of gene symbol, e.g., TTN or Ttn.
• GenomeInterval
  Genome position interval.
• GenomeLocEdit
  Genome sequence location with edit.
• MtInterval
  Mitochondrial position interval.
• MtLocEdit
  Mitochondrial sequence location with edit.
• NoRef
  Newtype that allows to suppress printing of reference bases.
• ProtInterval
  Protein position interval.
• ProtPos
  Protein position.
• RnaInterval
  RNA position interval.
• RnaLocEdit
  RNA sequence location with edit.
• RnaPos
  RNA position.
• TxInterval
  Transcript position interval.
• TxLocEdit
  Transcript sequence location with edit.
• TxPos
  Transcript position.

Enums

• CdsFrom
  Specifies whether the CDS position is relative to the CDS start or CDS end.
• Error
  Error type for parsing of HGVS expressions.
• HgvsVariant
  A HGVS variant specification.
• Mu
  Expression of “maybe uncertain”.
• NaEdit
  Edit of nucleic acids.
• ProtLocEdit
  Protein sequence location with edit or special.
• ProteinEdit
  Protein edit with interval end edit.
• UncertainLengthChange
  Uncertain change through extension.