Docs.rs
  • gsearch-0.1.5
    • gsearch 0.1.5
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    • Docs.rs crate page
    • MIT OR Apache-2.0
    • Links
    • Repository
    • crates.io
    • Source
    • Owners
    • jean-pierreBoth
    • jianshu93
    • Dependencies
      • annembed =0.1.4 normal optional
      • anyhow ^1.0.58 normal
      • bigsig ^0.1.0 normal
      • chrono ^0.4 normal
      • clap ^4.5 normal
      • concurrent-queue ^2.5 normal
      • cpu-time ^1.0 normal
      • crossbeam ^0.8 normal
      • crossbeam-channel ^0.5 normal
      • crossbeam-utils ^0.8 normal
      • csv ^1.1 normal
      • env_logger ^0.11 normal
      • frag_gene_scan_rs ^1.1.0 normal
      • fxhash ^0.2 normal
      • hnsw_rs =0.3.1 normal
      • kmerutils =0.0.12 normal
      • lazy_static ^1.4 normal
      • log ^0.4 normal
      • memory-stats ^1.1 normal
      • needletail =0.5.1 normal
      • num ^0.4 normal
      • num_cpus ^1.13.0 normal
      • parking_lot ^0.12 normal
      • probminhash ^0.1.11 normal
      • rayon ^1.10 normal
      • seq_io ^0.3.1 normal
      • serde ^1.0 normal
      • serde_json ^1.0 normal
      • skani ^0.1.0 normal
      • sourmash ^0.15.1 normal
      • strum ^0.21.0 normal
      • strum_macros ^0.21.0 normal
      • thiserror ^1.0.25 normal
    • Versions
    • 67.19% of the crate is documented
  • Platform
    • x86_64-unknown-linux-gnu
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gsearch0.1.5

Crate Items

  • Structs
  • Enums
  • Functions

List of all items

Structs

  • answer::ReqAnswer
  • matcher::MatchList
  • matcher::Matcher
  • matcher::SequenceMatch
  • utils::files::ProcessingState
  • utils::idsketch::Id
  • utils::idsketch::IdSeq
  • utils::idsketch::ItemDict
  • utils::idsketch::SeqDict
  • utils::parameters::AnnParameters
  • utils::parameters::ComputingParams
  • utils::parameters::FilterParams
  • utils::parameters::HnswParams
  • utils::parameters::ProcessingParams
  • utils::parameters::RequestParams
  • utils::parameters::SeqSketcherParams

Enums

  • utils::idsketch::SequenceType
  • utils::parameters::DataType
  • utils::parameters::SketchAlgo

Functions

  • aa::aafiles::filter_out_non_aa
  • aa::aafiles::process_aabuffer_by_sequence
  • aa::aafiles::process_aabuffer_in_one_block
  • aa::aafiles::process_aafile_by_sequence
  • aa::aarequest::get_sequence_matcher
  • aa::aasketch::aa_process_tohnsw
  • dna::dnafiles::filter_out_n
  • dna::dnafiles::process_buffer_by_sequence
  • dna::dnafiles::process_buffer_in_one_block
  • dna::dnafiles::process_file_by_sequence
  • dna::dnafiles::process_file_in_one_block
  • dna::dnarequest::get_sequence_matcher
  • dna::dnasketch::dna_process_tohnsw
  • utils::dumpload::dumpall
  • utils::dumpload::get_seqdict
  • utils::dumpload::reload_seqdict
  • utils::dumpload::seqdict_jsontocsv
  • utils::files::is_fasta_aa_file
  • utils::files::is_fasta_dna_file
  • utils::files::process_dir
  • utils::reloadhnsw::get_hnsw_type
  • utils::reloadhnsw::get_hnswio