List of all items

Structs

• commands::FeatureDensity
• commands::FilterChroms
• commands::Merge
• data::SerializableDatumType
• granges::GRanges
• granges::GRangesEmpty
• io::file::InputStream
• io::file::OutputStream
• io::parsers::bed::bed3::Bed3Iterator
• io::parsers::bed::bed4::Bed4Addition
• io::parsers::bed::bed4::Bed4Iterator
• io::parsers::bed::bed5::Bed5Addition
• io::parsers::bed::bed5::Bed5Iterator
• io::parsers::bed::bedlike::BedlikeIterator
• io::parsers::filters::FilteredRanges
• io::parsers::filters::UnwrappedRanges
• io::parsers::tsv::TsvRecordIterator
• io::tsv::BED_TSV
• io::tsv::TsvConfig
• iterators::GRangesIterator
• iterators::GRangesRecordIterator
• join::CombinedJoinData
• join::CombinedJoinDataBothEmpty
• join::CombinedJoinDataLeftEmpty
• join::CombinedJoinDataRightEmpty
• join::JoinData
• join::JoinDataBothEmpty
• join::JoinDataIterator
• join::JoinDataLeftEmpty
• join::JoinDataRightEmpty
• join::LeftGroupedJoin
• join::RangeReduced
• join::RangeTuple
• merging_iterators::ConditionalMergingIterator
• merging_iterators::ConditionalMergingResultIterator
• merging_iterators::MergingEmptyIterator
• merging_iterators::MergingEmptyResultIterator
• merging_iterators::MergingResultIterator
• ranges::GenomicRangeIndexedRecord
• ranges::GenomicRangeRecord
• ranges::GenomicRangeRecordEmpty
• ranges::RangeEmpty
• ranges::RangeIndexed
• ranges::coitrees::COITrees
• ranges::vec::VecRanges
• reporting::CommandOutput
• reporting::Report
• sequences::lazy::LazyLoader
• sequences::nucleotide::LazyNucleotideSequences
• sequences::nucleotide::NucleotideIterator
• sequences::nucleotide::NucleotideSequences
• sequences::nucleotide::Nucleotides
• unique_id::UniqueIdentifier

Enums

• commands::ProcessingMode
• data::DatumType
• data::operations::FloatOperation
• data::operations::StringOperation
• error::GRangesError
• io::parsers::bed::Strand
• io::parsers::detect::GenomicRangesFile
• io::parsers::detect::GenomicRangesParser
• sequences::lazy::LoadedType

Traits

• traits::AdjustableGenericRange
• traits::AsGRangesRef
• traits::DataContainer
• traits::GeneralRangeRecordIterator
• traits::GenericGenomicRange
• traits::GenericRange
• traits::GenericRangeOperations
• traits::GenomicRangeRecordUnwrappable
• traits::GenomicRangesTsvSerialize
• traits::IndexedDataContainer
• traits::IntoDatumType
• traits::IntoIterableRangesContainer
• traits::IterableRangeContainer
• traits::JoinDataOperations
• traits::LeftOverlaps
• traits::RangeContainer
• traits::Selection
• traits::Sequences

Macros

• create_granges_with_seqlens
• ensure_eq
• prelude::seqlens
• seqlens

Functions

• commands::build_tsv_writer
• commands::build_tsv_writer_with_config
• commands::granges_adjust
• commands::granges_filter
• commands::granges_flank
• commands::granges_map
• commands::granges_random_bed
• commands::granges_windows
• data::operations::median
• io::file::read_seqlens
• io::parsers::bed::bed_missing
• io::parsers::bed::bedlike::parse_bed_lazy
• io::parsers::bed::bedlike::valid_bedlike
• io::parsers::bed::deserialize_option_generic
• io::parsers::detect::detect_bed_variant
• io::parsers::tsv::build_tsv_reader
• io::parsers::tsv::deserialize_option_generic
• io::parsers::tsv::is_gzipped_file
• io::parsers::utils::get_base_extension
• io::parsers::utils::parse_bedlike
• io::parsers::utils::parse_column
• join::reduce_ranges
• ranges::operations::adjust_range
• ranges::try_range
• ranges::validate_range
• sequences::nucleotide::gc_content
• sequences::nucleotide::gc_content_strict
• sequences::nucleotide::parse_fasta
• test_utilities::copy_tempfile_for_inspection
• test_utilities::granges_binary_path
• test_utilities::granges_test_case_01
• test_utilities::granges_test_case_02
• test_utilities::granges_test_case_03
• test_utilities::head_file
• test_utilities::random_bed3file
• test_utilities::random_bed5file
• test_utilities::random_chrom
• test_utilities::random_coitrees
• test_utilities::random_granges
• test_utilities::random_granges_mock_bed5
• test_utilities::random_range
• test_utilities::random_seqlen
• test_utilities::random_vecranges
• test_utilities::temp_bedfile

Type Aliases

• Position
• PositionOffset
• ranges::coitrees::COITreesEmpty
• ranges::coitrees::COITreesIndexed
• ranges::vec::VecRangesEmpty
• ranges::vec::VecRangesIndexed

Constants

• INTERNAL_ERROR_MESSAGE
• io::parsers::bed::bedlike::PARSE_CAPACITY
• test_utilities::MAX_CHROM_LEN
• test_utilities::MAX_LEN
• test_utilities::MIN_CHROM_LEN
• test_utilities::MIN_LEN
• test_utilities::NCHROM
• test_utilities::NRANDOM_RANGES