Struct google_genomics1::ReadMethods

pub struct ReadMethods<'a, C, A> where
    C: 'a,
    A: 'a,  { /* fields omitted */ }

A builder providing access to all methods supported on read resources. It is not used directly, but through the Genomics hub.

Example

Instantiate a resource builder

extern crate hyper;
extern crate hyper_rustls;
extern crate yup_oauth2 as oauth2;
extern crate google_genomics1 as genomics1;
 
use std::default::Default;
use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
use genomics1::Genomics;
 
let secret: ApplicationSecret = Default::default();
let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
                              hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
                              <MemoryStorage as Default>::default(), None);
let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
// Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
// like `search(...)`
// to build up your call.
let rb = hub.reads();

Methods

impl<'a, C, A> ReadMethods<'a, C, A>

pub fn search(&self, request: SearchReadsRequest) -> ReadSearchCall<'a, C, A>

Create a builder to help you perform the following task:

Gets a list of reads for one or more read group sets.

For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics

Reads search operates over a genomic coordinate space of reference sequence & position defined over the reference sequences to which the requested read group sets are aligned.

If a target positional range is specified, search returns all reads whose alignment to the reference genome overlap the range. A query which specifies only read group set IDs yields all reads in those read group sets, including unmapped reads.

All reads returned (including reads on subsequent pages) are ordered by genomic coordinate (by reference sequence, then position). Reads with equivalent genomic coordinates are returned in an unspecified order. This order is consistent, such that two queries for the same content (regardless of page size) yield reads in the same order across their respective streams of paginated responses.

Implements GlobalAllianceApi.searchReads.

Arguments

• request - No description provided.

Trait Implementations

impl<'a, C, A> MethodsBuilder for ReadMethods<'a, C, A>