List of all items

Structs

• commands::coverage::CoverageArgs
• commands::depth::DepthArgs
• commands::extract::ExtractArgs
• commands::index::IndexArgs
• commands::intersect::IntersectArgs
• commands::intersect::RootMatched
• commands::sample::SampleArgs
• commands::search::SearchArgs
• index_loader::a2f::A2fMap
• index_loader::fts::FtsMap
• index_loader::gof::GofEntry
• index_loader::gof::GofMap
• index_loader::prt::PrtEntry
• index_loader::prt::PrtMap
• utils::common::CommonArgs
• utils::tree::Interval
• utils::tree::IntervalTree
• utils::tree_index::TreeIndexData

Enums

• commands::intersect::OverlapMode

Functions

• commands::coverage::run
• commands::coverage::write_breadth_results
• commands::depth::compute_hit_depth
• commands::depth::process_bam
• commands::depth::process_bed
• commands::depth::run
• commands::depth::write_depth_results
• commands::extract::run
• commands::index::run
• commands::intersect::gff_line_overlaps_queries
• commands::intersect::gff_type_allowed
• commands::intersect::parse_bed_file
• commands::intersect::parse_region
• commands::intersect::query_features
• commands::intersect::run
• commands::intersect::write_gff_match_only_by_coords
• commands::sample::run
• commands::search::run
• index_builder::core::build_index
• index_builder::core::write_binary_u32
• index_builder::core::write_gof
• index_builder::core::write_lines
• index_loader::a2f::load_a2f
• index_loader::core::load_atn
• index_loader::core::load_sqs
• index_loader::core::safe_mmap_readonly
• index_loader::fts::load_fts
• index_loader::gof::load_gof
• index_loader::prt::load_prt
• utils::common::append_suffix
• utils::common::check_index_files_exist
• utils::common::write_gff_header
• utils::common::write_gff_output
• utils::common::write_gff_output_filtered
• utils::tree_io::load_trees_mmap
• utils::tree_io::load_trees_streaming
• utils::tree_io::save_multiple_trees
• utils::tree_io::write_offsets_to_file