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  • gfatk-0.2.3
    • gfatk 0.2.3
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      • anyhow ^1.0 normal
      • atty ^0.2 normal
      • bstr ^1.4.0 normal
      • byteorder ^1.4.3 normal
      • clap ^4.2.1 normal
      • gfa ^0.10.1 normal
      • itertools ^0.10.2 normal
      • petgraph ^0.6.0 normal
      • assert_cmd ^2.0.4 dev
      • predicates ^3.0.2 dev
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gfatk0.2.3

Crate Items

  • Structs
  • Enums
  • Functions

List of all items

Structs

  • gfa::gfa::GFAtk
  • gfa::gfa::Overlap
  • gfa::gfa::Overlaps
  • gfa::graph::GFAdigraph
  • gfa::graph::GFAungraph
  • path::GFAPath
  • path::GFAPathElement
  • stats::Stat
  • stats::Stats
  • utils::GFAGraphLookups
  • utils::GFAGraphPair

Enums

  • path::CLIOpt
  • stats::GenomeType

Functions

  • dot::dot
  • extract::extract
  • extract_chloro::extract_chloro
  • extract_mito::extract_mito
  • fasta::fasta
  • gfa::gfa_string
  • gfa::graph::all_paths
  • gfa::graph::segments_subgraph
  • linear::linear
  • load::byte_lines_iter
  • load::load_gfa
  • load::load_gfa_stdin
  • overlap::overlap
  • path::parse_path
  • path::path
  • rename::rename_gfa
  • stats::stats
  • trim::trim
  • utils::format_usize_to_kb
  • utils::gc_content
  • utils::get_edge_coverage
  • utils::get_option_string
  • utils::is_stdin
  • utils::parse_cigar
  • utils::reverse_complement