List of all items
Structs
- ailist::AIList
- ailist::Interval
- common::models::region::Region
- common::models::region_set::RegionSet
- common::models::region_set::RegionSetIterator
- common::models::tokenized_region::TokenizedRegion
- common::models::tokenized_regionset::TokenizedRegionSet
- common::models::universe::Universe
- tokenizers::fragment_tokenizer::FragmentTokenizer
- tokenizers::soft_tokenizer::SoftTokenizer
- tokenizers::tree_tokenizer::TreeTokenizer
Enums
Traits
- tokenizers::traits::AtttentionMask
- tokenizers::traits::FromPretrained
- tokenizers::traits::Pad
- tokenizers::traits::SingleCellTokenizer
- tokenizers::traits::SpecialTokens
- tokenizers::traits::Tokenizer
Functions
- common::utils::extract_regions_from_bed_file
- common::utils::generate_id_to_region_map
- common::utils::generate_region_to_id_map
- common::utils::get_dynamic_reader
- io::append_tokens_to_gtok_file
- io::init_gtok_file
- io::read_tokens_from_gtok
- io::write_tokens_to_gtok
- tokenizers::cli::handlers::tokenize_bed_file
- tokenizers::cli::make_tokenization_cli
- tools::cli::handlers::data_dir_stat_handler
- tools::cli::handlers::pre_tokenization_handler
- tools::cli::handlers::tools_handler
- tools::cli::make_tools_cli
- tools::data_dir_stat
- tools::pre_tokenize_data
- uniwig::run_uniwig
- vocab::cli::handlers::prune_universe
- vocab::cli::make_prune_cli
- vocab::create_count_map
Constants
- common::consts::CHR_COL_NAME
- common::consts::DELIMITER
- common::consts::END_COL_NAME
- common::consts::GTOK_EXT
- common::consts::START_COL_NAME
- common::consts::special_tokens::BOS_CHR
- common::consts::special_tokens::BOS_END
- common::consts::special_tokens::BOS_START
- common::consts::special_tokens::CLS_CHR
- common::consts::special_tokens::CLS_END
- common::consts::special_tokens::CLS_START
- common::consts::special_tokens::EOS_CHR
- common::consts::special_tokens::EOS_END
- common::consts::special_tokens::EOS_START
- common::consts::special_tokens::MASK_CHR
- common::consts::special_tokens::MASK_END
- common::consts::special_tokens::MASK_START
- common::consts::special_tokens::PAD_CHR
- common::consts::special_tokens::PAD_END
- common::consts::special_tokens::PAD_START
- common::consts::special_tokens::SEP_CHR
- common::consts::special_tokens::SEP_END
- common::consts::special_tokens::SEP_START
- common::consts::special_tokens::UNKNOWN_CHR
- common::consts::special_tokens::UNKNOWN_END
- common::consts::special_tokens::UNKNOWN_START
- io::consts::GTOK_HEADER
- io::consts::GTOK_U16_FLAG
- io::consts::GTOK_U32_FLAG
- tokenizers::consts::TOKENIZE_CMD
- tokenizers::consts::UNIVERSE_FILE_NAME
- tools::consts::DATA_DIR_STAT_CMD
- tools::consts::DEFAULT_DATA_DIR_STAT_OUTPUT
- tools::consts::DEFAULT_PRETOKENIZE_OUT
- tools::consts::PRE_TOKENIZATION_CMD
- tools::consts::TOOLS_CMD
- vocab::consts::DEFAULT_MIN_COUNT
- vocab::consts::DEFAULT_OUTPUT
- vocab::consts::FILE_EXTENSION
- vocab::consts::PRUNE_CMD
- vocab::consts::VERSION