List of all items

Structs

• bwt::BWT
• bwt::BWTBuilder
• bwt::IdIter
• bwt::Pos
• bwt::Record
• bwt::RecordIter
• gbwt::BidirectionalState
• gbwt::FullPathName
• gbwt::GBWT
• gbwt::Metadata
• gbwt::PathName
• gbwt::SearchState
• gbwt::SequenceIter
• gbz::EdgeIter
• gbz::GBZ
• gbz::LinkIter
• gbz::NodeIter
• gbz::PathIter
• gbz::ReferencePath
• gbz::SegmentIter
• gbz::SegmentPathIter
• gbz::StateIter
• graph::Graph
• graph::Segment
• graph::SegmentIter
• headers::GBWTPayload
• headers::GBZPayload
• headers::GraphPayload
• headers::Header
• headers::MetadataPayload
• support::ByteCode
• support::ByteCodeIter
• support::Dictionary
• support::DisjointSets
• support::GraphPosition
• support::RLE
• support::RLEIter
• support::Run
• support::StringArray
• support::StringIter
• support::Tags

Enums

• support::Orientation

Traits

• headers::Payload

Functions

• algorithms::fast_weighted_lcs
• algorithms::lcs
• algorithms::naive_weighted_lcs
• algorithms::path_lcs
• support::decode_node
• support::decode_path
• support::edge_is_canonical
• support::encode_node
• support::encode_path
• support::encoded_edge_is_canonical
• support::encoded_path_is_canonical
• support::flip_node
• support::flip_path
• support::get_test_data
• support::intersect
• support::node_id
• support::node_orientation
• support::path_id
• support::path_is_canonical
• support::path_orientation
• support::reverse_complement
• support::reverse_path
• support::reverse_path_in_place

Constants

• ENDMARKER
• REFERENCE_SAMPLES_KEY
• REF_SAMPLE
• SOURCE_KEY
• SOURCE_VALUE
• support::COMPLEMENT