Function fmlrc::read_correction::assemble_from_kmer

pub fn assemble_from_kmer(
    bwt: &BitVectorBWT, 
    seed_kmer: &[u8], 
    min_count: u64, 
    branch_limit: usize, 
    max_branch_len: usize
) -> Vec<Vec<u8>>

Given an initial k-mer, this will extend outwards from that k-mer up to the max branch length.

Arguments

• bwt - the BWT source for k-mer counts
• seed_kmer - the initial seed k-mer in integer form
• min_count - the minimum count to consider a k-mer as present
• branch_limit - the maximum allowed number of branches
• max_branch_len - the maximum length of any given branch