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use std::convert::TryFrom;
use std::fs::File;
use std::io::BufRead;
use std::io::BufReader;
use std::iter::Iterator;
use std::str::FromStr;
use pest::Parser;
use crate::ast::EntityFrame;
use crate::ast::HeaderClause;
use crate::ast::HeaderFrame;
use crate::ast::OboDoc;
use crate::error::Error;
use crate::error::SyntaxError;
#[macro_use]
mod macros;
mod from_pair;
mod from_slice;
mod quickfind;
#[doc(inline)]
pub use fastobo_syntax::OboParser;
#[doc(inline)]
pub use fastobo_syntax::Rule;
pub use self::from_pair::FromPair;
pub use self::from_slice::FromSlice;
pub use self::quickfind::QuickFind;
pub struct FrameReader<B: BufRead> {
stream: B,
line: String,
offset: usize,
line_offset: usize,
header: HeaderFrame,
}
impl<B: BufRead> FrameReader<B> {
pub fn new(mut stream: B) -> Result<Self, Error> {
let mut line = String::new();
let mut l: &str;
let mut offset = 0;
let mut line_offset = 0;
let mut frame_clauses = Vec::new();
loop {
line.clear();
stream.read_line(&mut line)?;
l = line.trim();
if !l.starts_with('[') && !l.is_empty() {
unsafe {
let mut pairs = OboParser::parse(Rule::HeaderClause, &line).map_err(|e| {
Error::from(SyntaxError::from(e).with_offsets(line_offset, offset))
})?;
let clause = HeaderClause::from_pair_unchecked(pairs.next().unwrap())?;
frame_clauses.push(clause);
}
}
line_offset += 1;
offset += line.len();
if l.starts_with('[') || line.is_empty() {
break;
}
}
Ok(Self {
stream,
line,
offset,
line_offset,
header: HeaderFrame::from(frame_clauses),
})
}
pub fn header(&self) -> &HeaderFrame {
&self.header
}
pub fn header_mut(&mut self) -> &mut HeaderFrame {
&mut self.header
}
}
impl<B: BufRead> AsRef<B> for FrameReader<B> {
fn as_ref(&self) -> &B {
&self.stream
}
}
impl<B: BufRead> AsMut<B> for FrameReader<B> {
fn as_mut(&mut self) -> &mut B {
&mut self.stream
}
}
impl TryFrom<File> for FrameReader<BufReader<File>> {
type Error = Error;
fn try_from(f: File) -> Result<Self, Self::Error> {
Self::new(BufReader::new(f))
}
}
impl<B: BufRead> Iterator for FrameReader<B> {
type Item = Result<EntityFrame, Error>;
fn next(&mut self) -> Option<Self::Item> {
let mut l: &str = &self.line;
let mut frame_lines = String::new();
let mut local_line_offset = 0;
let mut local_offset = 0;
while !self.line.is_empty() {
frame_lines.push_str(l);
self.line.clear();
if let Err(e) = self.stream.read_line(&mut self.line) {
return Some(Err(Error::from(e)));
}
l = self.line.trim_start();
if l.starts_with('[') || self.line.is_empty() {
let res = unsafe {
match OboParser::parse(Rule::EntitySingle, &frame_lines) {
Ok(mut pairs) => EntityFrame::from_pair_unchecked(pairs.next().unwrap())
.map_err(Error::from),
Err(e) => Err(Error::from(
SyntaxError::from(e).with_offsets(self.line_offset, self.offset),
)),
}
};
self.line_offset += local_line_offset;
self.offset += local_offset;
return Some(res);
}
local_line_offset += 1;
local_offset += self.line.len();
}
None
}
}
impl<B: BufRead> TryFrom<FrameReader<B>> for OboDoc {
type Error = Error;
fn try_from(mut reader: FrameReader<B>) -> Result<Self, Self::Error> {
let mut doc = OboDoc::new();
std::mem::swap(reader.header_mut(), doc.header_mut());
for result in reader {
doc.entities_mut().push(result?);
}
Ok(doc)
}
}
#[cfg(test)]
mod tests {
use std::io::Cursor;
use textwrap::dedent;
use super::*;
use crate::semantics::Identified;
#[test]
fn frame_reader_empty() {
let mut reader = FrameReader::new(Cursor::new("")).unwrap();
assert!(reader.next().is_none());
assert!(reader.header().is_empty());
}
#[test]
fn frame_reader_iter() {
let mut reader = FrameReader::new(Cursor::new(dedent(
r#"
format-version: 1.2
[Term]
id: TST:001
[Term]
id: TST:002
"#,
)))
.expect("could not parse frame header");
assert_eq!(
reader.next().unwrap().unwrap().as_id().to_string(),
"TST:001"
);
assert_eq!(
reader.next().unwrap().unwrap().as_id().to_string(),
"TST:002"
);
assert!(reader.next().is_none());
}
}