List of all items

Structs

• algorithms::equal_angle::EqualAngleOpts
• algorithms::equal_angle::Pt
• cli::NeighbourNetArgs
• cli::ProgramArgs
• data::splits_blocks::SplitsBlock
• data::splits_blocks::SplitsFormat
• neighbour_net::NeighbourNet
• neighbour_net::matrix_io::ParseMeta
• neighbour_net::run_log::MatrixMeta
• neighbour_net::run_log::NNLSMeta
• neighbour_net::run_log::RunLog
• neighbour_net::run_log::RunTimings
• neighbour_net::run_log::SystemStats
• nexus::Nexus
• nexus::nexus_writer::NexusProperties
• phylo::phylo_graph::EdgeData
• phylo::phylo_graph::NodeData
• phylo::phylo_graph::PhyloGraph
• phylo::phylo_splits_graph::PhyloSplitsGraph
• splits::asplit::ASplit
• splits::bipartition::BiPartition
• weights::active_set_weights::NNLSParams
• weights::active_set_weights::SplitWeights
• weights::band::BandIndex
• weights::band::BandKernelPerf
• weights::cg_weights::CGSolveStats

Enums

• RayonInitStatus
• cli::ProgramSubcommand
• data::splits_blocks::Compatibility
• ordering::OrderingMethod
• ordering::ordering_multiway::SxMode
• weights::InferenceMethod

Traits

• data::splits_blocks::SplitsProvider
• splits::asplit::ASplitView
• weights::active_set_weights::Progress

Functions

• algorithms::convex_hull::convex_hull_apply
• algorithms::convex_hull::convex_hull_apply_with_used
• algorithms::equal_angle::assign_angles_to_edges
• algorithms::equal_angle::assign_angles_to_splits
• algorithms::equal_angle::assign_coordinates_to_nodes
• algorithms::equal_angle::equal_angle_apply
• algorithms::equal_angle::get_nontrivial_splits_ordered
• algorithms::equal_angle::init_graph_star
• algorithms::equal_angle::is_circular_by_cycle
• algorithms::equal_angle::normalize_cycle_1based
• algorithms::equal_angle::rotate_angles_align_leaf
• algorithms::equal_angle::rotate_angles_align_then_offset
• algorithms::equal_angle::rotate_angles_in_place
• algorithms::equal_angle::wrap_split
• init_rayon_threads
• neighbour_net::matrix_io::load_distance_matrix
• neighbour_net::matrix_io::symmetrize
• neighbour_net::run_log::system_stats
• nexus::network_writer::leaf_label
• nexus::network_writer::node_degree
• nexus::network_writer::write_network_block_splits
• nexus::nexus_writer::write_distances_block
• nexus::nexus_writer::write_header
• nexus::nexus_writer::write_nexus_all_to_path
• nexus::nexus_writer::write_nexus_all_to_writer
• nexus::nexus_writer::write_splits_block
• nexus::nexus_writer::write_st_assumptions_block
• nexus::nexus_writer::write_taxa_block
• ordering::ordering_huson2023::compute_order_huson_2023
• ordering::ordering_multiway::compute_order_multiway
• ordering::ordering_multiway::compute_order_multiway_with_sx
• run_cli
• run_fast_nnt_from_memory
• set_log_level
• utils::compute_least_squares_fit
• weights::active_set_weights::compute_asplits
• weights::active_set_weights::compute_use_1d
• weights::active_set_weights::feasible_move_active_set
• weights::band::avg_band_time_us
• weights::band::band_to_row
• weights::band::batch_rowsums_band
• weights::band::batch_rowsums_band_forward
• weights::band::calculate_ab_band
• weights::band::calculate_ab_band_with_masked_norm_sq
• weights::band::calculate_atx_band
• weights::band::calculate_forward_band
• weights::band::calculate_forward_band_with_norm_sq
• weights::band::row_to_band
• weights::band::vectorized_add3
• weights::band::vectorized_add4
• weights::cg_weights::compute_splits
• weights::nnls_ops::calc_ainv_y
• weights::nnls_ops::mask_elements_branchless
• weights::nnls_ops::sum_array_squared

Type Aliases

• nexus::SplitsRecord
• phylo::phylo_splits_graph::GraphEdge

Constants

• phylo::phylo_graph::DEFAULT_WEIGHT
• weights::cg_weights::DEFAULT_CUTOFF