List of all items
Structs
- combination::CombinationKey
- combination::ObservedCombination
- combinations::ObservedCombinations
- combinations::ReadSummary
- counting::AlignmentScorer
- errors::AlignmentInfo
- filters::AlignmentTolerance
- filters::FilterConfig
- filters::FilterMeta
- filters::FilteredCounts
- filters::FilteredReads
- groups::ReadGroup
- interning::GroupID
- interning::LibraryID
- interning::RegionID
- interning::SeqHandle
- interning::SeqInterner
- lib_spec::LibrarySpec
- library::Library
- library::LibraryMatch
- library::LibraryRegion
- library::SubLibrary
- library_combination::LibraryCombination
- library_combination::LibraryCombinationKey
- logging::LogProgress
- logging::ProgressStyle
- parsing::ReadPairParser
- parsing::SeqPath
- parsing::ThreadedReadPairParser
- region::ObservedRegion
- region::RegionKey
- seq_diff::SequenceDiff
- seqs::ReadPair
- seqs::SeqPair
Enums
- combination::CombinationMatch
- combinations::CacheHit
- counting::CountMode
- errors::FastaError
- errors::LibSpecError
- errors::LibraryError
- errors::ReadCountError
- errors::ReadPairError
- filters::FilterReason
- lib_spec::FlankingSequences
- lib_spec::Region
- library::DistanceMetric
- library::PartialMatching
- library_combination::LibraryRegionMatch
- logging::Progress
- parsing::Compression
- parsing::SeqFormat
- region::RegionCompleteness
- region::RegionMatch
- seq_diff::EditOperation
- seq_diff::TerminalFilter
Traits
Functions
- counting::count_reads
- errors::seq_to_string_or_log
- interning::clear_seq_interner
- interning::group_id_from_raw
- interning::group_id_from_str
- interning::group_id_to_raw
- interning::group_id_to_str
- interning::library_id_from_str
- interning::library_id_to_str
- interning::num_interned_forward
- interning::num_interned_reverse
- interning::region_id_from_str
- interning::region_id_to_str
- interning::reserve_seq_interner
- interning::seq_from_bytes
- interning::seq_to_bytes
- library::merge_matches
- output::write_counts
- output::write_filter_summary
- output::write_library_counts
- output::write_summary
- utils::div_or_zero
- utils::mean_quality