List of all items

Structs

• biology::io::taxonomy_reader::TaxonomyReader
• biology::taxonomy::Taxonomy
• biology::taxonomy::TaxonomyTree
• chemistry::amino_acid::amino_acid::CanonicalAminoAcid
• chemistry::amino_acid::amino_acid::NonCanonicalAminoAcid
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::RetentionCoefficient
• chemistry::element::Element
• chemistry::subatomic_particle::SubatomicParticle
• mass_spectrometry::spectrum::SimpleMsNSpectrum
• mass_spectrometry::spectrum::SimplePrecursor
• mass_spectrometry::spectrum::SimpleSpectrum
• proteomics::io::mzml::elements::activation::Activation
• proteomics::io::mzml::elements::activation::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::activation::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::activation::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::activation::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::analyzer::Analyzer
• proteomics::io::mzml::elements::analyzer::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::analyzer::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::analyzer::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::analyzer::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::binary::Binary
• proteomics::io::mzml::elements::binary_data_array::BinaryDataArray
• proteomics::io::mzml::elements::binary_data_array::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::binary_data_array::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::binary_data_array::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::binary_data_array::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::binary_data_array_list::BinaryDataArrayList
• proteomics::io::mzml::elements::chromatogram::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::chromatogram::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::chromatogram::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::chromatogram::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::chromatogram::Chromatogram
• proteomics::io::mzml::elements::chromatogram_list::ChromatogramList
• proteomics::io::mzml::elements::component_list::ComponentList
• proteomics::io::mzml::elements::cv::Cv
• proteomics::io::mzml::elements::cv_list::CvList
• proteomics::io::mzml::elements::cv_param::CvParam
• proteomics::io::mzml::elements::data_processing::DataProcessing
• proteomics::io::mzml::elements::data_processing_list::DataProcessingList
• proteomics::io::mzml::elements::detector::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::detector::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::detector::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::detector::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::detector::Detector
• proteomics::io::mzml::elements::file_checksum::FileChecksum
• proteomics::io::mzml::elements::file_content::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::file_content::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::file_content::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::file_content::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::file_content::FileContent
• proteomics::io::mzml::elements::file_description::FileDescription
• proteomics::io::mzml::elements::index::Index
• proteomics::io::mzml::elements::index_list::IndexList
• proteomics::io::mzml::elements::index_list_offset::IndexListOffset
• proteomics::io::mzml::elements::indexed_mz_ml::IndexedMzML
• proteomics::io::mzml::elements::instrument_configuration::InstrumentConfiguration
• proteomics::io::mzml::elements::instrument_configuration_list::InstrumentConfigurationList
• proteomics::io::mzml::elements::isolation_window::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::isolation_window::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::isolation_window::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::isolation_window::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::isolation_window::IsolationWindow
• proteomics::io::mzml::elements::mz_ml::MzML
• proteomics::io::mzml::elements::offset::Offset
• proteomics::io::mzml::elements::precursor::Precursor
• proteomics::io::mzml::elements::precursor_list::PrecursorList
• proteomics::io::mzml::elements::processing_method::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::processing_method::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::processing_method::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::processing_method::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::processing_method::ProcessingMethod
• proteomics::io::mzml::elements::referenceable_param_group::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::referenceable_param_group::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::referenceable_param_group::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::referenceable_param_group::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::referenceable_param_group::ReferenceableParamGroup
• proteomics::io::mzml::elements::referenceable_param_group_list::ReferenceableParamGroupList
• proteomics::io::mzml::elements::referenceable_param_group_ref::ReferenceableParamGroupRef
• proteomics::io::mzml::elements::run::IndexedRun
• proteomics::io::mzml::elements::run::Run
• proteomics::io::mzml::elements::scan::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::scan::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::scan::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::scan::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::scan::Scan
• proteomics::io::mzml::elements::scan_list::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::scan_list::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::scan_list::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::scan_list::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::scan_list::ScanList
• proteomics::io::mzml::elements::scan_window::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::scan_window::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::scan_window::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::scan_window::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::scan_window::ScanWindow
• proteomics::io::mzml::elements::scan_window_list::ScanWindowList
• proteomics::io::mzml::elements::selected_ion::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::selected_ion::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::selected_ion::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::selected_ion::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::selected_ion::SelectedIon
• proteomics::io::mzml::elements::selected_ion_list::SelectedIonList
• proteomics::io::mzml::elements::software::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::software::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::software::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::software::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::software::Software
• proteomics::io::mzml::elements::software_list::SoftwareList
• proteomics::io::mzml::elements::source::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::source::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::source::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::source::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::source::Source
• proteomics::io::mzml::elements::source_file::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::source_file::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::source_file::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::source_file::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::source_file::SourceFile
• proteomics::io::mzml::elements::source_file_list::SourceFileList
• proteomics::io::mzml::elements::spectrum::CV_PARAMS_MAY_ONCE
• proteomics::io::mzml::elements::spectrum::CV_PARAMS_MAY_ONCE_OR_MANY
• proteomics::io::mzml::elements::spectrum::CV_PARAMS_MUST_ONCE
• proteomics::io::mzml::elements::spectrum::CV_PARAMS_MUST_ONCE_OR_MANY
• proteomics::io::mzml::elements::spectrum::Spectrum
• proteomics::io::mzml::elements::spectrum_list::SpectrumList
• proteomics::io::mzml::elements::user_param::UserParam
• proteomics::io::mzml::index::Index
• proteomics::io::mzml::indexer::Indexer
• proteomics::io::mzml::reader::File
• proteomics::io::mzml::reader::Reader
• proteomics::ontology::Ontology
• proteomics::peptide::Peptide
• proteomics::post_translational_modifications::PostTranslationalModification
• proteomics::proteases::protease::Peptides
• proteomics::proteases::trypsin::Trypsin
• proteomics::proteases::unspecific::Unspecific
• tools::quick_xml::AttributeNotFound

Enums

• proteomics::io::mzml::error::Error
• proteomics::io::mzml::reader::MzMlElement
• proteomics::peptide::Terminus
• proteomics::post_translational_modifications::ModificationType
• proteomics::post_translational_modifications::Position

Traits

• chemistry::amino_acid::amino_acid::AminoAcid
• mass_spectrometry::spectrum::MsNSpectrum
• mass_spectrometry::spectrum::Precursor
• mass_spectrometry::spectrum::Spectrum
• proteomics::io::mzml::elements::has_cv_params::HasCvParams
• proteomics::io::mzml::elements::is_element::IsElement
• proteomics::io::mzml::elements::is_list::IsList
• proteomics::io::mzml::elements::run::IsRun
• proteomics::proteases::protease::Protease

Macros

• has_cv_params

Functions

• chemistry::amino_acid::amino_acid::get_amino_acid_by_one_letter_code
• chemistry::amino_acid::amino_acid::get_hydropathicity_kd
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::calc_hydrophobicity
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::get_correction_coefficient
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::get_retention_coefficient
• chemistry::element::get_element_by_symbol
• chemistry::subatomic_particle::get_subatomic_particle_by_name
• mass_spectrometry::unit_conversions::mass_to_charge_to_dalton
• proteomics::io::mzml::indexer::get_id_attributes
• proteomics::peptide::calculate_gravy_kd
• proteomics::peptide::calculate_mass_of_peptide_sequence
• proteomics::proteases::functions::get_by_name
• tools::fancy_regex::split
• tools::quick_xml::get_attributes
• tools::quick_xml::get_value_of_attribute

Statics

• proteomics::ontology::PSI_MS
• proteomics::ontology::UNIT

Constants

• biology::io::taxonomy_reader::TAXDMP_URL
• chemistry::amino_acid::amino_acid::ALANINE
• chemistry::amino_acid::amino_acid::ARGININE
• chemistry::amino_acid::amino_acid::ASPARAGINE
• chemistry::amino_acid::amino_acid::ASPARAGINE_OR_ASPARTIC_ACID
• chemistry::amino_acid::amino_acid::ASPARTIC_ACID
• chemistry::amino_acid::amino_acid::CANONICAL_AMINO_ACIDS
• chemistry::amino_acid::amino_acid::CYSTEINE
• chemistry::amino_acid::amino_acid::GLUTAMIC_ACID
• chemistry::amino_acid::amino_acid::GLUTAMINE
• chemistry::amino_acid::amino_acid::GLUTAMINE_OR_GLUTAMIC_ACID
• chemistry::amino_acid::amino_acid::GLYCINE
• chemistry::amino_acid::amino_acid::HISTIDINE
• chemistry::amino_acid::amino_acid::ISOLEUCINE
• chemistry::amino_acid::amino_acid::ISOLEUCINE_OR_LEUCINE
• chemistry::amino_acid::amino_acid::LEUCINE
• chemistry::amino_acid::amino_acid::LYSINE
• chemistry::amino_acid::amino_acid::METHIONINE
• chemistry::amino_acid::amino_acid::NON_CANONICAL_AMINO_ACIDS
• chemistry::amino_acid::amino_acid::PHENYLALANINE
• chemistry::amino_acid::amino_acid::PROLINE
• chemistry::amino_acid::amino_acid::PYRROLYSINE
• chemistry::amino_acid::amino_acid::SELENOCYSTEINE
• chemistry::amino_acid::amino_acid::SERINE
• chemistry::amino_acid::amino_acid::THREONINE
• chemistry::amino_acid::amino_acid::TRYPTOPHAN
• chemistry::amino_acid::amino_acid::TYROSINE
• chemistry::amino_acid::amino_acid::UNKNOWN
• chemistry::amino_acid::amino_acid::VALINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_ALANINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_ARGININE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_ASPARAGINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_ASPARTIC_ACID
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_CYSTEINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_GLUTAMIC_ACID
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_GLUTAMINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_GLYCINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_HISTIDINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_ISOLEUCINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_LEUCINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_LYSINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_METHIONINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_PHENYLALANINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_PROLINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_SERINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_THREONINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_TRYPTOPHAN
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_TYROSINE
• chemistry::amino_acid::hydrophobicity::krokhin_wilkins_hydrophobicity::KWRC_VALINE
• chemistry::element::CARBON
• chemistry::element::ELEMENTS
• chemistry::element::HYDROGEN
• chemistry::element::NITROGEN
• chemistry::element::OXYGEN
• chemistry::element::PHOSPHORUS
• chemistry::element::SELENIUM
• chemistry::element::SULPHUR
• chemistry::subatomic_particle::ELECTRON
• chemistry::subatomic_particle::NEUTRON
• chemistry::subatomic_particle::PROTON
• chemistry::subatomic_particle::SUBATOMIC_PARTICLES
• proteomics::proteases::functions::ALL
• proteomics::proteases::trypsin::NAME
• proteomics::proteases::unspecific::NAME