Module debruijn::graph [−][src]
Expand description
Containers for path-compressed De Bruijn graphs
Structs
A compressed DeBruijn graph carrying auxiliary data on each node of type D.
This type does not carry the sorted index arrays the allow the graph
to be walked efficiently. The DeBruijnGraph type wraps this type and add those
vectors.
A compressed DeBruijn graph carrying auxiliary data on each node of type D.
The struct carries sorted index arrays the allow the graph
to be walked efficiently.
Unbranched sequence in the DeBruijn graph
Iterator over nodes in a DeBruijnGraph
Iterator over nodes in a DeBruijnGraph
A DebruijnGraph node with a reference to the sequence of the node.
An iterator over the kmers in a DeBruijn graph node