Function debruijn::msp::simple_scan

pub fn simple_scan<V: Vmer, P: Kmer>(
    k: usize, 
    seq: &V, 
    permutation: &[usize], 
    rc: bool
) -> Vec<MspInterval>

👎 Deprecated:

Please use the Scanner type instead

Determine MSP substrings of seq, for given k and p. Returns a vector of tuples indicating the substrings, and the pmer values: (p-mer value, min p-mer position, start position, end position) permutation is a permutation of the lexicographically-sorted set of all pmers. A permutation of pmers sorted by their inverse frequency in the dataset will give the most even bucketing of MSPs over pmers.