1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12

// Copyright 2016-2019 Johannes Köster, David Lähnemann.
// Licensed under the GNU GPLv3 license (https://opensource.org/licenses/GPL-3.0)
// This file may not be copied, modified, or distributed
// except according to those terms.

use bio::stats::Prob;

// Single base insertion and deletion rates for R1 according to Schirmer et al.
// BMC Bioinformatics 2016, 10.1186/s12859-016-0976-y
pub static PROB_ILLUMINA_INS: Prob = Prob(2.8e-6);
pub static PROB_ILLUMINA_DEL: Prob = Prob(5.1e-6);
pub static PROB_ILLUMINA_SUBST: Prob = Prob(0.0021);