[−][src]Module varlociraptor::utils

Structs

A lazy buffer for reference sequences.

Describes whether read overlaps a variant in a valid or invalid (too large overlap) way.

collect_prob_dist	Collect distribution of posterior probabilities from a VCF file that has been written by varlociraptor.
collect_variants	Collect variants from a given ´bcf::Record`.
events_to_tags
evidence_kass_raftery_to_letter
filter_by_threshold	Filter a VCF record stream by a minimum threshold on the sum of posterior probabilities of a given set of Events. The threshold should be an informative false discovery rate (FDR) threshold, e.g. determined with the varlociraptor FDR control functionality.
filter_calls	Filter calls by a given function.
generalized_cigar
is_repeat_variant	Returns true if given variant is located in a repeat region.
max_prob	Return the greater of two given probabilities.
select	Select values with given indices from a slice and return them as an iterator.
tags_prob_sum	Sum up in log space the probabilities of the given tags for all variants of vartype in the given BCF record.