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//! A sparse implementation of a binary matrix optimized for row operations. //! //! The main object of this crate is the [`SparseBinMat`](SparseBinMat). //! All elements in a binary matrix are element of the binary field GF2. //! That is, they are either 0 or 1 and addition is modulo 2. //! //! # Quick start //! //! To instanciate a matrix, you need to specify the number of columns as well //! as the position of 1 in each rows. //! //! ``` //! use sparse_bin_mat::SparseBinMat; //! //! // This is the matrix //! // 1 0 1 0 1 //! // 0 1 0 1 0 //! // 0 0 1 0 0 //! let matrix = SparseBinMat::new(5, vec![vec![0, 2, 4], vec![1, 3], vec![2]]); //! ``` //! //! It is easy to access elements or rows of a matrix. However, //! since the matrix are optimized for row operations, you need //! to transpose the matrix if you want to perform column operations. //! //! ``` //! # use sparse_bin_mat::SparseBinMat; //! let matrix = SparseBinMat::new(5, vec![vec![0, 2, 4], vec![1, 3], vec![2]]); //! assert_eq!(matrix.row(1), Some([1, 3].as_ref())); //! assert_eq!(matrix.get(0, 0), Some(1)); //! assert_eq!(matrix.get(0, 1), Some(0)); //! // The element (0, 7) is out of bound for a 3 x 5 matrix. //! assert_eq!(matrix.get(0, 7), None); //! ``` //! //! Adition and multiplication are implemented between matrix references. //! //! ``` //! # use sparse_bin_mat::SparseBinMat; //! let matrix = SparseBinMat::new(3, vec![vec![0, 1], vec![1, 2], vec![0, 2]]); //! let identity = SparseBinMat::identity(3); //! //! let sum = SparseBinMat::new(3, vec![vec![1], vec![2], vec![0]]); //! assert_eq!(&matrix + &identity, sum); //! //! assert_eq!(&matrix * &identity, matrix); //! ``` //! //! Many useful operations and decompositions are implemented. //! These include, but are not limited to //! - [`rank`](SparseBinMat::rank), //! - [`echelon form`](SparseBinMat::echelon_form), //! - [`nullspace`](SparseBinMat::nullspace), //! - [`tranposition`](SparseBinMat::transposed), //! - [`horizontal`](SparseBinMat::horizontal_concat_with) and //! [`vertical`](SparseBinMat::vertical_concat_with) concatenations, //! - and more ... //! //! Operations are implemented as I need them, //! feel welcome to raise an issue if you need a new functionnality. use itertools::Itertools; use std::collections::HashMap; use std::ops::{Add, Mul}; mod bitwise_operations; use bitwise_operations::{rows_bitwise_sum, rows_dot_product}; mod concat; use concat::{concat_horizontally, concat_vertically}; mod constructor_utils; use constructor_utils::{assert_rows_are_inbound, initialize_from}; mod gauss_jordan; use gauss_jordan::GaussJordan; mod nullspace; use nullspace::nullspace; mod rows; pub use crate::rows::Rows; mod transpose; use transpose::transpose; type BinaryNumber = u8; /// A sparse binary matrix optimized for row operations. #[derive(Debug, PartialEq, Eq, Hash, Clone)] pub struct SparseBinMat { row_ranges: Vec<usize>, column_indices: Vec<usize>, number_of_columns: usize, } impl SparseBinMat { /// Creates a new matrix with the given number of columns /// and list of rows. /// /// A row is a list of the positions where the elements have value 1. /// All rows are sorted during insertion. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::new(4, vec![vec![0, 1, 2], vec![0, 2, 3]]); /// /// assert_eq!(matrix.number_of_rows(), 2); /// assert_eq!(matrix.number_of_columns(), 4); /// assert_eq!(matrix.number_of_elements(), 8); /// ``` /// /// # Panic /// /// Panics if a position in a row is greater or equal to /// the number of columns. /// /// ```should_panic /// # use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::new(2, vec![vec![1, 2], vec![3, 0]]); /// ``` pub fn new(number_of_columns: usize, rows: Vec<Vec<usize>>) -> Self { assert_rows_are_inbound(number_of_columns, &rows); let (row_ranges, column_indices) = initialize_from(rows); Self { row_ranges, column_indices, number_of_columns, } } /// Creates an identity matrix of the given length. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::identity(5); /// /// let identity_rows = (0..5).map(|x| vec![x]).collect(); /// let identity_matrix = SparseBinMat::new(5, identity_rows); /// /// assert_eq!(matrix, identity_matrix); /// ``` pub fn identity(length: usize) -> Self { Self { column_indices: (0..length).collect(), row_ranges: (0..length + 1).collect(), number_of_columns: length, } } /// Creates a matrix fill with zeros of the given dimensions. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::zeros(2, 3); /// /// assert_eq!(matrix.number_of_rows(), 2); /// assert_eq!(matrix.number_of_columns(), 3); /// assert_eq!(matrix.number_of_zeros(), 6); /// assert_eq!(matrix.number_of_ones(), 0); /// ``` pub fn zeros(number_of_rows: usize, number_of_columns: usize) -> Self { Self::new(number_of_columns, vec![Vec::new(); number_of_rows]) } /// Creates an empty matrix. /// /// This allocate minimally, so it is a good placeholder. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::empty(); /// /// assert_eq!(matrix.number_of_rows(), 0); /// assert_eq!(matrix.number_of_columns(), 0); assert_eq!(matrix.number_of_elements(), 0); /// // Note that these are not equal since new preallocate some space /// // to store the data. /// assert_ne!(SparseBinMat::new(0, Vec::new()), SparseBinMat::empty()); /// /// // To test for emptyness, you should prefer the following. /// assert!(matrix.is_empty()); /// ``` pub fn empty() -> Self { Self { column_indices: Vec::new(), row_ranges: Vec::new(), number_of_columns: 0, } } /// Returns the number of columns in the matrix. pub fn number_of_columns(&self) -> usize { self.number_of_columns } /// Returns the number of rows in the matrix pub fn number_of_rows(&self) -> usize { match self.row_ranges.len() { 0 => 0, n => n - 1, } } /// Returns the number of rows and columns in the matrix. pub fn dimension(&self) -> (usize, usize) { (self.number_of_rows(), self.number_of_columns()) } /// Returns the number of elements in the matrix. pub fn number_of_elements(&self) -> usize { self.number_of_rows() * self.number_of_columns() } /// Returns the number of elements with value 0 in the matrix. pub fn number_of_zeros(&self) -> usize { self.number_of_elements() - self.number_of_ones() } /// Returns the number of elements with value 1 in the matrix. pub fn number_of_ones(&self) -> usize { self.column_indices.len() } /// Returns true if the number of elements in the matrix is 0. pub fn is_empty(&self) -> bool { self.number_of_elements() == 0 } /// Returns the value at the given row and column /// or None if one of the index is out of bound. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let rows = vec![vec![0, 1], vec![1, 2]]; /// let matrix = SparseBinMat::new(3, rows); /// /// assert_eq!(matrix.get(0, 0), Some(1)); /// assert_eq!(matrix.get(1, 0), Some(0)); /// assert_eq!(matrix.get(2, 0), None); /// ``` pub fn get(&self, row: usize, column: usize) -> Option<BinaryNumber> { if column < self.number_of_columns() { self.row(row) .map(|row| if row.contains(&column) { 1 } else { 0 }) } else { None } } /// Returns true if the value at the given row and column is 0 /// or None if one of the index is out of bound. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let rows = vec![vec![0, 1], vec![1, 2]]; /// let matrix = SparseBinMat::new(3, rows); /// /// assert_eq!(matrix.is_zero_at(0, 0), Some(false)); /// assert_eq!(matrix.is_zero_at(1, 0), Some(true)); /// assert_eq!(matrix.is_zero_at(2, 0), None); /// ``` pub fn is_zero_at(&self, row: usize, column: usize) -> Option<bool> { self.get(row, column).map(|value| value == 0) } /// Returns true if the value at the given row and column is 1 /// or None if one of the index is out of bound. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let rows = vec![vec![0, 1], vec![1, 2]]; /// let matrix = SparseBinMat::new(3, rows); /// /// assert_eq!(matrix.is_one_at(0, 0), Some(true)); /// assert_eq!(matrix.is_one_at(1, 0), Some(false)); /// assert_eq!(matrix.is_one_at(2, 0), None); /// ``` pub fn is_one_at(&self, row: usize, column: usize) -> Option<bool> { self.get(row, column).map(|value| value == 1) } /// Returns a reference to the given row of the matrix /// or None if the row index is out of bound. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let rows = vec![vec![0, 1], vec![1, 2]]; /// let matrix = SparseBinMat::new(3, rows); /// /// assert_eq!(matrix.row(0), Some([0, 1].as_ref())); /// assert_eq!(matrix.row(1), Some([1, 2].as_ref())); /// assert_eq!(matrix.row(2), None); /// ``` pub fn row(&self, row: usize) -> Option<&[usize]> { let row_start = self.row_ranges.get(row)?; let row_end = self.row_ranges.get(row + 1)?; Some(&self.column_indices[*row_start..*row_end]) } /// Returns an iterator yielding the rows of the matrix /// as slice of non zero positions. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let rows = vec![vec![0, 1, 2, 5], vec![1, 3, 4], vec![2, 4, 5], vec![0, 5]]; /// let matrix = SparseBinMat::new(7, rows); /// /// let mut iter = matrix.rows(); /// /// assert_eq!(iter.next(), Some([0, 1, 2, 5].as_ref())); /// assert_eq!(iter.next(), Some([1, 3, 4].as_ref())); /// assert_eq!(iter.next(), Some([2, 4, 5].as_ref())); /// assert_eq!(iter.next(), Some([0, 5].as_ref())); /// assert_eq!(iter.next(), None); /// ``` pub fn rows(&self) -> Rows { Rows::from(self) } /// Returns an iterator yielding the number /// of non zero elements in each row of the matrix. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let rows = vec![vec![0, 1, 2, 5], vec![1, 3, 4], vec![2, 4, 5], vec![0, 5]]; /// let matrix = SparseBinMat::new(7, rows); /// /// assert_eq!(matrix.row_weights().collect::<Vec<usize>>(), vec![4, 3, 3, 2]); /// ``` pub fn row_weights<'a>(&'a self) -> impl Iterator<Item = usize> + 'a { self.rows().map(|row| row.len()) } /// Gets the transposed version of the matrix /// by swapping the columns with the rows. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// /// let rows = vec![vec![0, 1, 2], vec![1, 3], vec![0, 2, 3]]; /// let matrix = SparseBinMat::new(4, rows); /// /// let transposed_matrix = matrix.transposed(); /// /// let expected_rows = vec![vec![0, 2], vec![0, 1], vec![0, 2], vec![1, 2]]; /// let expected_matrix = SparseBinMat::new(3, expected_rows); /// /// assert_eq!(transposed_matrix, expected_matrix); /// ``` pub fn transposed(&self) -> Self { transpose(self) } /// Computes the rank of the matrix. /// That is, the number of linearly independent rows or columns. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// /// let rows = vec![vec![0, 1], vec![1, 2], vec![0, 2]]; /// let matrix = SparseBinMat::new(3, rows); /// /// assert_eq!(matrix.rank(), 2); /// ``` pub fn rank(&self) -> usize { GaussJordan::new(self).rank() } /// Returns an echeloned version of the matrix. /// /// A matrix in echelon form as the property that no /// rows any given row have a 1 in the first non trivial /// position of that row. Also, all rows are linearly /// independent. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let rows = vec![vec![0, 1, 2], vec![0], vec![1, 2], vec![0, 2]]; /// let matrix = SparseBinMat::new(3, rows); /// /// let expected = SparseBinMat::new(3, vec![vec![0, 1, 2], vec![1], vec![2]]); /// /// assert_eq!(matrix.echelon_form(), expected); /// ``` pub fn echelon_form(&self) -> Self { GaussJordan::new(self).echelon_form() } /// Returns a matrix for which the rows are the generators /// of the nullspace of the original matrix. /// /// The nullspace of a matrix M is the set of vectors N such that /// Mx = 0 for all x in N. /// Therefore, if N is the nullspace matrix obtain from this function, /// we have that M * N^T = 0. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::new( /// 6, /// vec![vec![0, 1, 3, 5], vec![2, 3, 4], vec![2, 5], vec![0, 1, 3]], /// ); /// /// let expected = SparseBinMat::new(6, vec![vec![0, 3, 4,], vec![0, 1]]); /// let nullspace = matrix.nullspace(); /// /// assert_eq!(nullspace, expected); /// assert_eq!(&matrix * &nullspace.transposed(), SparseBinMat::zeros(4, 2)); /// ``` pub fn nullspace(&self) -> Self { nullspace(self) } /// Returns the horizontal concatenation of two matrices. /// /// If the matrix have different number of rows, the smallest /// one is padded with empty rows. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let left_matrix = SparseBinMat::new(3, vec![vec![0, 1], vec![1, 2]]); /// let right_matrix = SparseBinMat::new(4, vec![vec![1, 2, 3], vec![0, 1], vec![2, 3]]); /// /// let concatened = left_matrix.horizontal_concat_with(&right_matrix); /// /// let expected = SparseBinMat::new(7, vec![vec![0, 1, 4, 5, 6], vec![1, 2, 3, 4], vec![5, 6]]); /// /// assert_eq!(concatened, expected); /// ``` pub fn horizontal_concat_with(&self, other: &SparseBinMat) -> SparseBinMat { concat_horizontally(self, other) } /// Returns the vertical concatenation of two matrices. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let left_matrix = SparseBinMat::new(3, vec![vec![0, 1], vec![1, 2]]); /// let right_matrix = SparseBinMat::identity(3); /// /// let concatened = left_matrix.vertical_concat_with(&right_matrix); /// /// let expected = SparseBinMat::new(3, vec![vec![0, 1], vec![1, 2], vec![0], vec![1], vec![2]]); /// /// assert_eq!(concatened, expected); /// ``` /// /// # Panic /// /// Panics if the matrices have a different number of columns. pub fn vertical_concat_with(&self, other: &SparseBinMat) -> SparseBinMat { if self.number_of_columns() != other.number_of_columns() { panic!( "{} and {} matrices can't be concatenated vertically", dimension_to_string(self.dimension()), dimension_to_string(other.dimension()), ); } concat_vertically(self, other) } /// Returns a new matrix keeping only the given rows. /// /// # Example /// /// ``` /// use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::new(5, vec![ /// vec![0, 1, 2], /// vec![2, 3, 4], /// vec![0, 2, 4], /// vec![1, 3], /// ]); /// /// let truncated = SparseBinMat::new(5, vec![ /// vec![0, 1, 2], /// vec![0, 2, 4], /// ]); /// /// assert_eq!(matrix.keep_only_rows(&[0, 2]), truncated); /// assert_eq!(matrix.keep_only_rows(&[0, 2, 3]).number_of_rows(), 3); /// ``` /// /// # Panic /// /// Panics if some rows are out of bound. pub fn keep_only_rows(&self, rows: &[usize]) -> Self { self.assert_rows_are_inbound(rows); let rows = self .rows() .enumerate() .filter(|(index, _)| rows.contains(index)) .map(|(_, row)| row.to_vec()) .collect(); Self::new(self.number_of_columns(), rows) } /// Returns a truncated matrix where the given rows are removed. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::new(5, vec![ /// vec![0, 1, 2], /// vec![2, 3, 4], /// vec![0, 2, 4], /// vec![1, 3], /// ]); /// /// let truncated = SparseBinMat::new(5, vec![ /// vec![2, 3, 4], /// vec![1, 3], /// ]); /// /// assert_eq!(matrix.without_rows(&[0, 2]), truncated); /// assert_eq!(matrix.without_rows(&[1, 2, 3]).number_of_rows(), 1); /// ``` /// /// # Panic /// /// Panics if some rows are out of bound. pub fn without_rows(&self, rows: &[usize]) -> Self { let to_keep: Vec<usize> = (0..self.number_of_rows()) .filter(|x| !rows.contains(x)) .collect(); self.keep_only_rows(&to_keep) } fn assert_rows_are_inbound(&self, rows: &[usize]) { for row in rows { if *row >= self.number_of_columns() { panic!( "row {} is out of bound for {} matrix", row, dimension_to_string(self.dimension()) ); } } } /// Returns a new matrix keeping only the given columns. /// /// Columns are relabeled to the fit new number of columns. /// /// # Example /// /// ``` /// use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::new(5, vec![ /// vec![0, 1, 2], /// vec![2, 3, 4], /// vec![0, 2, 4], /// vec![1, 3], /// ]); /// /// let truncated = SparseBinMat::new(3, vec![ /// vec![0, 1], /// vec![2], /// vec![0, 2], /// vec![1], /// ]); /// /// assert_eq!(matrix.keep_only_columns(&[0, 1, 4]), truncated); /// assert_eq!(matrix.keep_only_columns(&[1, 2]).number_of_columns(), 2); /// ``` /// /// # Panic /// /// Panics if some columns are out of bound. pub fn keep_only_columns(&self, columns: &[usize]) -> Self { self.assert_columns_are_inbound(columns); let old_to_new_column_map = columns .iter() .enumerate() .map(|(new, old)| (old, new)) .collect::<HashMap<_, _>>(); let rows = self .rows() .map(|row| { row.iter() .filter_map(|column| old_to_new_column_map.get(column).cloned()) .collect() }) .collect(); Self::new(columns.len(), rows) } /// Returns a truncated matrix where the given columns are removed. /// /// Columns are relabeled to fit the new number of columns. /// /// # Example /// /// ``` /// # use sparse_bin_mat::SparseBinMat; /// let matrix = SparseBinMat::new(5, vec![ /// vec![0, 1, 2], /// vec![2, 3, 4], /// vec![0, 2, 4], /// vec![1, 3], /// ]); /// /// let truncated = SparseBinMat::new(3, vec![ /// vec![0], /// vec![1, 2], /// vec![2], /// vec![0, 1], /// ]); /// /// assert_eq!(matrix.without_columns(&[0, 2]), truncated); /// ``` /// /// # Panic /// /// Panics if some columns are out of bound. pub fn without_columns(&self, columns: &[usize]) -> Self { let to_keep: Vec<usize> = (0..self.number_of_columns) .filter(|x| !columns.contains(x)) .collect(); self.keep_only_columns(&to_keep) } fn assert_columns_are_inbound(&self, columns: &[usize]) { for column in columns { if *column >= self.number_of_columns() { panic!( "column {} is out of bound for {} matrix", column, dimension_to_string(self.dimension()) ); } } } } impl Add<&SparseBinMat> for &SparseBinMat { type Output = SparseBinMat; fn add(self, other: &SparseBinMat) -> SparseBinMat { if self.dimension() != other.dimension() { panic!( "{} and {} matrices can't be added", dimension_to_string(self.dimension()), dimension_to_string(other.dimension()), ); } let rows = self .rows() .zip(other.rows()) .map(|(row, other_row)| rows_bitwise_sum(row, other_row)) .collect(); SparseBinMat::new(self.number_of_columns(), rows) } } impl Mul<&SparseBinMat> for &SparseBinMat { type Output = SparseBinMat; fn mul(self, other: &SparseBinMat) -> SparseBinMat { if self.number_of_columns() != other.number_of_rows() { panic!( "{} and {} matrices can't be multiplied", dimension_to_string(self.dimension()), dimension_to_string(other.dimension()), ); } let other_transposed = other.transposed(); let rows = self .rows() .map(|row| { other_transposed .rows() .positions(|column| rows_dot_product(row, column) == 1) .collect() }) .collect(); SparseBinMat::new(other.number_of_columns(), rows) } } fn dimension_to_string(dimension: (usize, usize)) -> String { format!("({} x {})", dimension.0, dimension.1) } //impl std::fmt::Display for SparseBinMat { //fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { //for row in self.rows() { //write!(f, "[ ")?; //for column in row.iter() { //write!(f, "{} ", column)?; //} //write!(f, "]")?; //} //Ok(()) //} //} #[cfg(test)] mod test { use super::*; #[test] fn rows_are_sorted_on_construction() { let rows = vec![vec![1, 0], vec![0, 2, 1], vec![1, 2, 3]]; let matrix = SparseBinMat::new(4, rows); assert_eq!(matrix.row(0).unwrap().as_ref(), &[0, 1]); assert_eq!(matrix.row(1).unwrap().as_ref(), &[0, 1, 2]); assert_eq!(matrix.row(2).unwrap().as_ref(), &[1, 2, 3]); } #[test] #[should_panic] fn panics_on_construction_if_rows_are_out_of_bound() { let rows = vec![vec![0, 1, 5], vec![2, 3, 4]]; SparseBinMat::new(5, rows); } #[test] fn addition() { let first_matrix = SparseBinMat::new(6, vec![vec![0, 2, 4], vec![1, 3, 5]]); let second_matrix = SparseBinMat::new(6, vec![vec![0, 1, 2], vec![3, 4, 5]]); let sum = SparseBinMat::new(6, vec![vec![1, 4], vec![1, 4]]); assert_eq!(&first_matrix + &second_matrix, sum); } #[test] fn panics_on_addition_if_different_dimensions() { let matrix_6_2 = SparseBinMat::new(6, vec![vec![0, 2, 4], vec![1, 3, 5]]); let matrix_6_3 = SparseBinMat::new(6, vec![vec![0, 1, 2], vec![3, 4, 5], vec![0, 3]]); let matrix_2_2 = SparseBinMat::new(2, vec![vec![0], vec![1]]); let result = std::panic::catch_unwind(|| &matrix_6_2 + &matrix_6_3); assert!(result.is_err()); let result = std::panic::catch_unwind(|| &matrix_6_2 + &matrix_2_2); assert!(result.is_err()); let result = std::panic::catch_unwind(|| &matrix_6_3 + &matrix_2_2); assert!(result.is_err()); } #[test] fn multiplication_with_other_matrix() { let first_matrix = SparseBinMat::new(3, vec![vec![0, 1], vec![1, 2]]); let second_matrix = SparseBinMat::new(5, vec![vec![0, 2], vec![1, 3], vec![2, 4]]); let product = SparseBinMat::new(5, vec![vec![0, 1, 2, 3], vec![1, 2, 3, 4]]); assert_eq!(&first_matrix * &second_matrix, product); } #[test] fn panics_on_matrix_multiplication_if_wrong_dimension() { let matrix_6_3 = SparseBinMat::new(6, vec![vec![0, 1, 2], vec![3, 4, 5], vec![0, 3]]); let matrix_2_2 = SparseBinMat::new(2, vec![vec![0], vec![1]]); let result = std::panic::catch_unwind(|| &matrix_6_3 * &matrix_2_2); assert!(result.is_err()); } }