Enum seq_geom_parser::GeomPiece

pub enum GeomPiece {
    Barcode(GeomLen),
    Umi(GeomLen),
    Discard(GeomLen),
    ReadSeq(GeomLen),
    Fixed(NucStr),
}

The pieces of geometry (types) we currently support.

Variants

Barcode(GeomLen)

A cellular barcode

Umi(GeomLen)

A unique molecular identifier

Discard(GeomLen)

Sequence that will be discarded

ReadSeq(GeomLen)

Biological read sequence

Fixed(NucStr)

A fixed sequence anchor / motif

Implementations

impl GeomPiece

pub fn is_fixed_len(&self) -> bool

This method returns true if the current GeomPiece has a fixed length (either FixedLen or a Fixed(NucStr)), and false otherwise.

pub fn is_bounded(&self) -> bool

This method returns true if the current GeomPiece has a bounded length (either Bounded, BoundedRange, or a Fixed(NucStr)), and false otherwise.

pub fn is_complex(&self) -> bool

This method returns true if the current GeomPiece is “complex” (either BoundedRange, or a Fixed(NucStr)), and false otherwise.

Trait Implementations

impl Clone for GeomPiece

fn clone(&self) -> GeomPiece

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for GeomPiece

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for GeomPiece

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats and returns the canonical string representation of each type of GeomPiece.