Function rustybam::trim_overlap::trim_overlapping_pafs

pub fn trim_overlapping_pafs(
    left: &mut PafRecord, 
    right: &mut PafRecord, 
    match_score: i32, 
    diff_score: i32, 
    indel_score: i32
)

Example

use rustybam::trim_overlap::*;
use rustybam::paf::*;

let mut left = PafRecord::new("Q 10 0 10 + T 20 0 10 3 9 60 cg:Z:7=1X2=").unwrap();
left.aligned_pairs();
let mut right = PafRecord::new("Q 10 5 10 - T 20 10 15 3 9 60 cg:Z:3=1X1=").unwrap();
right.aligned_pairs();

trim_overlapping_pafs(&mut left, &mut right, 1 ,1 ,1);

assert_eq!(left.cigar.to_string(), "7=");
assert_eq!(right.cigar.to_string(), "3=");